Detailed information NTG0214343

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RS694_RS16045
• Genome accession: NZ_CP019239
• Coordinates: 3369202..3370050 (+)
• Length: 282 a.a.
• NCBI ID: WP_029707423.1
• Uniprot ID: -
• Organism: Rhodoferax saidenbachensis strain DSM 22694
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3364202..3375050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RS694_RS16020 (RS694_16020)	rpmA	3364280..3364540 (-)	261	WP_029707429.1	50S ribosomal protein L27	-
RS694_RS16025 (RS694_16025)	rplU	3364553..3364867 (-)	315	WP_029707428.1	50S ribosomal protein L21	-
RS694_RS16030 (RS694_16030)	-	3365074..3366003 (+)	930	WP_081708612.1	polyprenyl synthetase family protein	-
RS694_RS16035 (RS694_16035)	pilB	3366232..3367965 (+)	1734	WP_029707425.1	type IV-A pilus assembly ATPase PilB	Machinery gene
RS694_RS16040 (RS694_16040)	pilC	3367985..3369202 (+)	1218	WP_029707424.1	type II secretion system F family protein	Machinery gene
RS694_RS16045 (RS694_16045)	pilD	3369202..3370050 (+)	849	WP_029707423.1	prepilin peptidase	Machinery gene
RS694_RS16050 (RS694_16050)	coaE	3370065..3370664 (+)	600	WP_029707422.1	dephospho-CoA kinase	-
RS694_RS16055 (RS694_16055)	zapD	3370687..3371442 (+)	756	WP_029707421.1	cell division protein ZapD	-
RS694_RS16060 (RS694_16060)	-	3371459..3371662 (+)	204	WP_076069821.1	DNA gyrase inhibitor YacG	-
RS694_RS16065 (RS694_16065)	-	3371714..3372202 (-)	489	WP_029707420.1	NUDIX domain-containing protein	-
RS694_RS16070 (RS694_16070)	-	3372199..3373026 (-)	828	WP_420805931.1	ATP-binding protein	-
RS694_RS16075 (RS694_16075)	argJ	3373094..3374323 (-)	1230	WP_029707417.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 282 a.a.
• Molecular weight: 30758.52 Da
• Isoelectric Point: 7.8710

>NTDB_id=214343 RS694_RS16045 WP_029707423.1 3369202..3370050(+) (pilD) [Rhodoferax saidenbachensis strain DSM 22694]
MSVELQWLAASLAGILGLLIGSFLNVVIYRLPKMMERQWAAECAELSGKAQEPEEASFNLMLPRSRCPHCSRQIRWFENI
PVISYLALRGKCASCKAPISPRYPLVEIATGALFFFCVWQWGATMTGVAWCVFAAALLALALIDWDTTLLPDDITLPLLW
LGLVAASLRWIPVDLNSALWGAIAGYLSLWSVYWAFKLVTGKEGMGYGDFKLFAALGVWFGWQTLIPMILLASVIGAVVG
IAMKFASQLREGGYVPFGPFLAGAGLTALIGGPAPLRHFVGL

Nucleotide

• Length: 849 bp

>NTDB_id=214343 RS694_RS16045 WP_029707423.1 3369202..3370050(+) (pilD) [Rhodoferax saidenbachensis strain DSM 22694]
ATGTCCGTGGAATTGCAATGGCTCGCCGCATCATTGGCGGGCATTTTGGGACTATTGATCGGTAGCTTCCTCAATGTCGT
GATTTATCGGCTGCCCAAGATGATGGAAAGGCAATGGGCTGCAGAATGCGCCGAGCTGTCCGGAAAAGCTCAAGAACCGG
AAGAGGCATCTTTCAATTTGATGCTGCCCCGCTCGCGCTGTCCGCATTGCTCACGCCAGATTCGCTGGTTTGAAAATATT
CCCGTTATTAGTTATCTGGCTCTCCGCGGAAAATGCGCGTCCTGCAAGGCACCTATCAGCCCGCGCTACCCCCTCGTCGA
AATAGCCACAGGAGCCCTATTCTTCTTCTGCGTATGGCAATGGGGCGCCACCATGACCGGTGTGGCGTGGTGTGTGTTTG
CGGCAGCACTCTTGGCATTGGCCTTGATTGATTGGGACACCACGCTCCTACCCGACGACATCACGCTTCCTTTGCTTTGG
CTTGGCCTGGTGGCTGCCAGCTTGCGCTGGATTCCCGTCGATCTAAATTCGGCCTTGTGGGGCGCCATTGCGGGTTATCT
GTCGTTGTGGTCGGTGTATTGGGCGTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGCTACGGGGACTTCAAGTTGTTTG
CGGCCCTGGGCGTCTGGTTTGGTTGGCAAACGCTGATCCCCATGATATTGCTGGCATCCGTCATCGGTGCTGTGGTGGGC
ATCGCCATGAAGTTTGCCAGCCAACTGCGCGAAGGAGGTTATGTGCCGTTTGGGCCTTTCCTGGCCGGTGCGGGACTGAC
GGCTTTGATAGGGGGGCCAGCCCCACTGCGGCACTTCGTCGGTCTTTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (131-241)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (15-121)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	52.381	96.809	0.507
pilD	Vibrio cholerae strain A1552	53.184	94.681	0.504
pilD	Neisseria gonorrhoeae MS11	50.388	91.489	0.461
pilD	Acinetobacter baumannii D1279779	46.494	96.099	0.447
pilD	Acinetobacter nosocomialis M2	45.756	96.099	0.44