Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AHTJS_RS14870 Genome accession   NZ_CP018871
Coordinates   3023399..3024625 (+) Length   408 a.a.
NCBI ID   WP_005083853.1    Uniprot ID   N9GGD8
Organism   Acinetobacter haemolyticus strain TJS01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3018399..3029625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AHTJS_RS14835 (AHTJS_14820) rimP 3018990..3019514 (-) 525 WP_005083847.1 ribosome maturation factor RimP -
  AHTJS_RS14855 (AHTJS_14840) secG 3020150..3020479 (-) 330 WP_004637686.1 preprotein translocase subunit SecG -
  AHTJS_RS14860 (AHTJS_14845) tpiA 3020492..3021283 (-) 792 WP_075316302.1 triose-phosphate isomerase -
  AHTJS_RS14865 (AHTJS_14850) pilB 3021659..3023374 (+) 1716 WP_075316303.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AHTJS_RS14870 (AHTJS_14855) pilC 3023399..3024625 (+) 1227 WP_005083853.1 type II secretion system F family protein Machinery gene
  AHTJS_RS14875 (AHTJS_14860) pilD 3024625..3025485 (+) 861 WP_075316304.1 prepilin peptidase Machinery gene
  AHTJS_RS14880 (AHTJS_14865) coaE 3025487..3026092 (+) 606 WP_005088002.1 dephospho-CoA kinase -
  AHTJS_RS14885 (AHTJS_14870) - 3026089..3027000 (-) 912 WP_075316305.1 DMT family transporter -
  AHTJS_RS14895 (AHTJS_14880) rlmB 3027040..3027786 (-) 747 WP_004637678.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AHTJS_RS14900 (AHTJS_14885) - 3027895..3028221 (-) 327 WP_004637677.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44933.40 Da        Isoelectric Point: 9.7764

>NTDB_id=211178 AHTJS_RS14870 WP_005083853.1 3023399..3024625(+) (pilC) [Acinetobacter haemolyticus strain TJS01]
MAAKKAQMMPTFAYEGVDRKGAKIKGELPARNMALAKVTLRKQGVTIKNIREKRKNILEGLMKKKVTTLDITVFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGLKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSVWMQEYWFILIIVVGAIIA
CFLEAKKRSKKFRDTLDKLALRLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATHFENEVDNAVDGLTAMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=211178 AHTJS_RS14870 WP_005083853.1 3023399..3024625(+) (pilC) [Acinetobacter haemolyticus strain TJS01]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACTTTTGCTTACGAAGGGGTAGATCGCAAAGGGGCAAAAATTAAAGGGGA
ATTACCAGCACGTAATATGGCTTTAGCCAAAGTCACATTACGCAAACAAGGGGTAACGATTAAGAACATTCGAGAAAAAC
GCAAAAACATTCTTGAAGGTTTGATGAAGAAGAAAGTCACCACCCTTGATATCACGGTATTTACACGCCAACTGGCAACC
ATGATGAAAGCTGGTGTCCCACTCGTGCAAGGCTTTGAAATCGTGGCTGAAGGTTTAGAGAATCCATCGATGCGGGAAGT
AGTGCTTGGACTCAAAGGCGAAGTTGAAGGCGGTAATACCTTTGCGGGCGCATTAAGAAAATACCCACAATACTTTGACA
ACCTCTTTTGCTCTTTAGTTGAATCTGGTGAACAATCTGGTGCACTAGAAACCATGCTAGATCGCGTCGCGATTTATAAA
GAGAAAAGTGAGTTACTCAAACAAAAAATCAAAAAAGCCATGAAATATCCTGCGACAGTTATCGTGGTTGCAGTGATTGT
CACGATTATTTTGATGGTCAAGGTAGTCCCTGTTTTCCAAGATCTATTTAGCTCATTTGGTGCAGATTTACCTGCTTTTA
CCAAAATGGTCGTGAATATGTCCGTTTGGATGCAAGAATATTGGTTTATTTTAATTATCGTTGTCGGTGCGATTATTGCC
TGTTTTCTTGAAGCAAAAAAACGTAGTAAAAAATTCCGCGACACTCTTGATAAACTTGCATTACGCTTACCGATTTTTGG
TGATTTGGTTTATAAAGCCATTATTGCGCGTTATAGTCGTACACTTGCAACAACATTTGCAGCAGGGGTTCCATTGATTG
ATGCACTCGAATCAACGGCTGGTGCAACCAATAACGTTGTTTATGAAGAAGCCGTGATGAAAATTCGTGAAGATGTTGCT
ACAGGACAACAGTTACAATTTGCCATGCGTGTTTCTAATCGCTTTCCATCAATGGCGATTCAAATGGTCGCAATTGGTGA
AGAATCAGGTGCTTTAGATAGTATGCTTGATAAAGTTGCCACTCACTTCGAAAATGAAGTCGACAATGCGGTCGATGGCT
TAACCGCAATGATGGAGCCATTAATTATGGCAATTCTAGGAGTACTTGTGGGTGGTCTTGTTATCGCGATGTACCTTCCA
ATTTTCCAAATGGGTTCTGTGGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9GGD8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

92.647

100

0.926
  pilC Acinetobacter baylyi ADP1

86.275

100

0.863
  pilC Pseudomonas stutzeri DSM 10701

61.425

99.755

0.613
  pilC Legionella pneumophila strain ERS1305867

52.84

99.265

0.525
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

41.278

99.755

0.412
  pilC Vibrio campbellii strain DS40M4

40.342

100

0.404
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment