Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BC6307_RS19925 Genome accession   NZ_CP018866
Coordinates   3935615..3936007 (-) Length   130 a.a.
NCBI ID   WP_084380505.1    Uniprot ID   -
Organism   Sutcliffiella cohnii strain DSM 6307     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3930615..3941007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BC6307_RS19910 (BC6307_19905) - 3931198..3933990 (+) 2793 WP_066420435.1 DEAD/DEAH box helicase -
  BC6307_RS19915 (BC6307_19910) - 3934216..3934668 (-) 453 WP_066417515.1 hypothetical protein -
  BC6307_RS19920 (BC6307_19915) - 3935033..3935452 (+) 420 WP_066417521.1 helix-turn-helix transcriptional regulator -
  BC6307_RS19925 (BC6307_19920) ssbB 3935615..3936007 (-) 393 WP_084380505.1 single-stranded DNA-binding protein Machinery gene
  BC6307_RS19930 (BC6307_19925) - 3936313..3936744 (+) 432 WP_066417524.1 YwpF family protein -
  BC6307_RS19935 (BC6307_19930) - 3936781..3937338 (-) 558 WP_094366197.1 class D sortase -
  BC6307_RS19940 (BC6307_19935) - 3937335..3938258 (-) 924 WP_066417527.1 processed acidic surface protein -
  BC6307_RS24910 - 3938517..3938669 (-) 153 WP_157076668.1 hypothetical protein -
  BC6307_RS19945 (BC6307_19940) - 3939123..3939902 (+) 780 WP_066417530.1 hypothetical protein -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14932.90 Da        Isoelectric Point: 9.7798

>NTDB_id=211106 BC6307_RS19925 WP_084380505.1 3935615..3936007(-) (ssbB) [Sutcliffiella cohnii strain DSM 6307]
MINQVTLVGRLTRDPELRYTSEGTAVATFHLAVNRNFKNQAGEIEADFVSCRVWRKLAENVANYCRKGSLIGITGRIQTR
RYEDKSGSWVYVTDVVGDDVRFLDKRKEKNVIFTEGRSERKTDIQLETSK

Nucleotide


Download         Length: 393 bp        

>NTDB_id=211106 BC6307_RS19925 WP_084380505.1 3935615..3936007(-) (ssbB) [Sutcliffiella cohnii strain DSM 6307]
ATGATCAATCAAGTGACTCTTGTTGGTCGGTTAACGAGAGACCCTGAGCTCCGCTATACGAGTGAAGGAACTGCTGTAGC
GACGTTTCATTTAGCGGTAAATAGAAATTTTAAAAATCAAGCTGGAGAAATAGAAGCTGACTTTGTTTCTTGTCGAGTTT
GGCGTAAGCTTGCAGAAAATGTTGCAAACTATTGTCGAAAGGGGTCACTGATCGGCATAACGGGAAGAATTCAAACTCGT
CGCTACGAAGACAAAAGCGGATCTTGGGTCTACGTGACAGATGTAGTGGGAGACGATGTAAGGTTTCTGGACAAACGAAA
AGAGAAAAACGTTATTTTTACAGAAGGTAGAAGTGAAAGAAAGACTGATATACAATTAGAAACGTCAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

66.364

84.615

0.562
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.748

82.308

0.5
  ssb Latilactobacillus sakei subsp. sakei 23K

60.377

81.538

0.492
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.307

97.692

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

46.789

83.846

0.392
  ssbB/cilA Streptococcus mitis NCTC 12261

46.789

83.846

0.392
  ssbB/cilA Streptococcus pneumoniae Rx1

45.872

83.846

0.385
  ssbB/cilA Streptococcus pneumoniae D39

45.872

83.846

0.385
  ssbB/cilA Streptococcus pneumoniae R6

45.872

83.846

0.385
  ssbB/cilA Streptococcus mitis SK321

45.872

83.846

0.385
  ssbA Streptococcus mutans UA159

44.954

83.846

0.377

Multiple sequence alignment