Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Tchl_RS05130 Genome accession   NZ_CP018839
Coordinates   1076860..1078089 (-) Length   409 a.a.
NCBI ID   WP_075147453.1    Uniprot ID   A0A1H5VSS6
Organism   Thauera chlorobenzoica strain 3CB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1071860..1083089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tchl_RS05105 (Tchl_1023) prmC 1072066..1072929 (+) 864 WP_075147448.1 peptide chain release factor N(5)-glutamine methyltransferase -
  Tchl_RS05110 (Tchl_1024) aspS 1072992..1074803 (-) 1812 WP_075147449.1 aspartate--tRNA ligase -
  Tchl_RS05115 (Tchl_1025) - 1074905..1075531 (-) 627 WP_075147450.1 DUF502 domain-containing protein -
  Tchl_RS05120 (Tchl_1026) - 1075581..1075838 (-) 258 WP_075147451.1 FmdB family zinc ribbon protein -
  Tchl_RS05125 (Tchl_1027) pilD 1076005..1076856 (-) 852 WP_075147452.1 A24 family peptidase Machinery gene
  Tchl_RS05130 (Tchl_1028) pilC 1076860..1078089 (-) 1230 WP_075147453.1 type II secretion system F family protein Machinery gene
  Tchl_RS05135 (Tchl_1029) pilB 1078104..1079819 (-) 1716 WP_075147454.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Tchl_RS05140 (Tchl_1030) - 1079908..1081188 (-) 1281 WP_075147455.1 HlyC/CorC family transporter -
  Tchl_RS05145 (Tchl_1031) - 1081385..1082215 (-) 831 WP_075147456.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44232.05 Da        Isoelectric Point: 10.2337

>NTDB_id=210882 Tchl_RS05130 WP_075147453.1 1076860..1078089(-) (pilC) [Thauera chlorobenzoica strain 3CB1]
MATASRAVRGTGPKEDLYSWEGKDKAGKLVRGEMRASGDAMVQAMLRRQGIRVSKVRKQKLSRGGRIGDKEIALFTRQLA
TMMKSGVPLLQAFDIAMKGSGNPALSRLLNEIRNDVETGSSLSQAFAKYPRHFDKLFTNLVAAGEQAGILDNLLDRIATY
KEKILAIKSKIKSALFYPAAVVVVAGLVISVMMLFVIPEFKNVFSSFGADLPTPTLMVIAMSDFFVAYWYLMFGALLAVV
LAIAWSYKRSSTMQIAVDRAVLRLPVIGPIIRKATVARWTRTLSTMFAAGVPLVEALDSVGGASGNHVYLTATRQIQGEV
STGTSLTIAMQNATVFPSMVVQMVSIGEESGQLDSMLGKVADFFEQEVDDAVAGLSQLLEPLIMVFLGTIIGGLVVAMYL
PIFKLGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=210882 Tchl_RS05130 WP_075147453.1 1076860..1078089(-) (pilC) [Thauera chlorobenzoica strain 3CB1]
ATGGCGACAGCAAGCCGGGCGGTGCGCGGCACAGGCCCGAAGGAAGATCTCTACAGCTGGGAAGGCAAGGACAAGGCGGG
CAAGCTGGTCCGTGGCGAGATGCGCGCCAGCGGCGACGCCATGGTCCAGGCCATGCTGCGCCGCCAGGGCATCCGGGTGA
GCAAGGTGCGCAAGCAGAAGCTGTCGCGCGGCGGACGCATCGGCGACAAGGAAATCGCCTTGTTCACCCGCCAGCTCGCC
ACCATGATGAAATCCGGCGTTCCCCTGCTCCAGGCCTTCGACATCGCCATGAAAGGGTCGGGCAATCCGGCGCTGTCGCG
CCTGCTCAACGAGATCCGCAACGACGTCGAGACCGGCTCCAGCCTGTCCCAGGCGTTCGCCAAATATCCCAGGCACTTCG
ACAAGCTGTTCACCAACCTCGTCGCCGCCGGCGAGCAGGCCGGGATCCTCGACAATCTCCTCGACCGCATCGCCACCTAC
AAGGAAAAAATCCTCGCGATCAAGAGCAAGATCAAGTCGGCCCTGTTCTACCCCGCAGCCGTGGTCGTGGTCGCCGGCCT
GGTGATTTCGGTGATGATGCTGTTCGTGATTCCCGAGTTCAAGAACGTGTTCTCCAGCTTCGGCGCCGATCTGCCCACCC
CCACGCTGATGGTGATCGCGATGTCCGACTTCTTCGTCGCCTACTGGTACCTGATGTTCGGCGCACTGCTCGCGGTCGTG
CTCGCGATCGCCTGGAGCTACAAGCGCTCGAGCACAATGCAGATCGCCGTCGACCGCGCCGTGCTGCGCCTGCCGGTGAT
CGGCCCGATCATCCGCAAGGCGACCGTGGCCCGGTGGACGCGCACGCTATCGACGATGTTCGCCGCCGGCGTGCCATTGG
TCGAAGCCCTCGACTCGGTGGGCGGCGCCTCGGGCAACCACGTCTACCTGACCGCGACCCGGCAGATCCAGGGCGAAGTG
AGCACCGGCACCAGCCTCACCATTGCGATGCAGAACGCAACGGTGTTCCCGTCCATGGTGGTGCAGATGGTTTCGATCGG
CGAGGAGTCCGGCCAGCTCGACTCCATGCTCGGCAAGGTCGCGGACTTCTTCGAGCAGGAAGTCGACGACGCCGTCGCCG
GCCTGTCGCAGCTGCTCGAACCGTTGATCATGGTCTTCCTCGGCACCATCATCGGCGGCCTGGTGGTCGCGATGTACCTG
CCGATCTTCAAGCTCGGCTCGGTCGTGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H5VSS6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.03

96.822

0.513
  pilC Pseudomonas stutzeri DSM 10701

50.376

97.555

0.491
  pilG Neisseria gonorrhoeae MS11

49.37

97.066

0.479
  pilG Neisseria meningitidis 44/76-A

48.866

97.066

0.474
  pilC Acinetobacter baumannii D1279779

48.111

97.066

0.467
  pilC Acinetobacter baylyi ADP1

47.487

97.311

0.462
  pilC Vibrio cholerae strain A1552

42.172

96.822

0.408
  pilC Vibrio campbellii strain DS40M4

39.655

99.267

0.394
  pilC Thermus thermophilus HB27

39.152

98.044

0.384

Multiple sequence alignment