Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BI317_RS18165 Genome accession   NZ_CP018731
Coordinates   3969557..3970813 (+) Length   418 a.a.
NCBI ID   WP_074058082.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. gardneri strain ICMP 7383     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3964557..3975813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI317_RS18150 (BI317_18150) pilR 3965095..3966549 (+) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator
  BI317_RS18155 (BI317_18155) pilB 3966874..3968610 (-) 1737 WP_074058080.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BI317_RS18160 (BI317_18160) pilA/pilAI 3968787..3969194 (-) 408 WP_074058081.1 pilin Machinery gene
  BI317_RS18165 (BI317_18165) pilC 3969557..3970813 (+) 1257 WP_074058082.1 type II secretion system F family protein Machinery gene
  BI317_RS18170 (BI317_18170) - 3970821..3971684 (+) 864 WP_002812278.1 A24 family peptidase -
  BI317_RS18175 (BI317_18175) coaE 3971698..3972321 (+) 624 WP_074058083.1 dephospho-CoA kinase -
  BI317_RS18180 (BI317_18180) - 3972855..3973256 (+) 402 WP_074058084.1 SymE family type I addiction module toxin -
  BI317_RS18185 (BI317_18185) - 3973354..3973539 (+) 186 WP_006448358.1 hypothetical protein -
  BI317_RS18190 (BI317_18190) - 3973542..3973838 (+) 297 WP_225306997.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BI317_RS18195 (BI317_18195) - 3973974..3975308 (-) 1335 WP_074058086.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45482.75 Da        Isoelectric Point: 10.3304

>NTDB_id=209919 BI317_RS18165 WP_074058082.1 3969557..3970813(+) (pilC) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
MSAVRSAIKKKSVSIADQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGINPTVVKVKPKPLFGAAGKKVTAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGESAGVLET
VLDTVASYKENIEALKGKIKKALFYPTMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQMIVNASRFMVSWWWAL
LIVVVGAVVGLVFAYKRSPAMQHGMDRLILKVPVIGQIMHNSSVARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEEA
VLRMRNDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=209919 BI317_RS18165 WP_074058082.1 3969557..3970813(+) (pilC) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
ATGTCAGCAGTGCGTAGTGCAATCAAGAAAAAGTCGGTCTCTATCGCCGACCAGATGAGCCCATTTGTCTGGGAGGGGAC
CGACAAGCGTGGCGTGAAGATGAAAGGCGAACAGACTGCCCGAAACGCAAACCTGCTACGCGCCGAGTTGCGTCGCCAAG
GCATCAATCCAACGGTGGTCAAGGTCAAACCGAAGCCGCTATTTGGCGCGGCAGGCAAGAAGGTCACTGCAAAGGACATC
TCGTTTTTCAGCCGGCAGATGGCGACGATGATGAAATCGGGTGTACCTATTGTAGGAGCCCTTGAAATCATTGGGAGTGG
TCAAAAAAACCCGCGTATGCGAACAATGGTAGGGCAGATCCGTACGGATATCGAGGGTGGCTCCTCGCTCCACGAAGCGA
TTAGCAAACATCCTGTTCAATTCGACGAACTTTATCGAAATCTGGTGAGAGCCGGCGAGAGCGCGGGCGTTTTAGAGACA
GTTCTTGATACCGTAGCAAGCTACAAAGAAAACATCGAAGCACTCAAAGGCAAGATCAAAAAAGCCCTGTTCTACCCAAC
CATGGTGATGGCGGTAGCATTATTAGTCAGCTCCATTTTGCTCATCTGGGTAGTTCCACAATTTGAGGATGTTTTCAAAG
GCTTTGGTGCCGAGCTGCCAGCCTTCACTCAGATGATTGTGAATGCATCGCGCTTCATGGTCTCCTGGTGGTGGGCGCTA
CTCATCGTGGTCGTTGGAGCCGTTGTCGGTCTTGTTTTCGCCTATAAGCGTTCCCCAGCTATGCAGCACGGCATGGACCG
GCTGATTTTGAAGGTGCCTGTCATCGGTCAAATCATGCATAACAGCTCTGTAGCACGCTTCGCCAGAACGACAGCCGTGA
CGTTCAAGGCAGGCGTGCCTTTGGTGGAAGCGCTGAGTATCGTCGCTGGCGCCACGGGCAACTCAGTTTACGAAGAGGCC
GTGCTGCGCATGCGTAACGATGTGTCCGTTGGTTATCCTGTGAATGTGGCCATGAAGCAAGTCAACCTCTTCCCGCACAT
GGTGGTCCAGATGACCGCTATTGGTGAGGAAGCTGGTGCGCTGGATGCGATGCTATTCAAGGTGGCCGAGTATTTCGAGC
AGGAGGTCAACAATGCGGTTGACGCACTCAGCAGCCTGCTTGAACCCCTGATCATGGTCTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.518

95.215

0.51
  pilC Legionella pneumophila strain ERS1305867

52.099

96.89

0.505
  pilC Acinetobacter baylyi ADP1

50.75

95.694

0.486
  pilC Acinetobacter baumannii D1279779

49.877

97.368

0.486
  pilG Neisseria gonorrhoeae MS11

42.716

96.89

0.414
  pilG Neisseria meningitidis 44/76-A

42.222

96.89

0.409
  pilC Vibrio cholerae strain A1552

41.562

94.976

0.395
  pilC Vibrio campbellii strain DS40M4

39.012

96.89

0.378

Multiple sequence alignment