Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BI317_RS18150 Genome accession   NZ_CP018731
Coordinates   3965095..3966549 (+) Length   484 a.a.
NCBI ID   WP_174555994.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. gardneri strain ICMP 7383     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3960095..3971549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI317_RS18135 (BI317_18135) sucD 3961094..3961969 (-) 876 WP_006450729.1 succinate--CoA ligase subunit alpha -
  BI317_RS18140 (BI317_18140) sucC 3961994..3963163 (-) 1170 WP_006450728.1 ADP-forming succinate--CoA ligase subunit beta -
  BI317_RS18145 (BI317_18145) - 3963396..3965009 (+) 1614 WP_006448368.1 HAMP domain-containing sensor histidine kinase -
  BI317_RS18150 (BI317_18150) pilR 3965095..3966549 (+) 1455 WP_174555994.1 sigma-54 dependent transcriptional regulator Regulator
  BI317_RS18155 (BI317_18155) pilB 3966874..3968610 (-) 1737 WP_074058080.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BI317_RS18160 (BI317_18160) pilA/pilAI 3968787..3969194 (-) 408 WP_074058081.1 pilin Machinery gene
  BI317_RS18165 (BI317_18165) pilC 3969557..3970813 (+) 1257 WP_074058082.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52490.13 Da        Isoelectric Point: 6.5126

>NTDB_id=209916 BI317_RS18150 WP_174555994.1 3965095..3966549(+) (pilR) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
MGPNPDDNCRPSSRWAIVRTMSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEISKQYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASTESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERSGDLPQLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISAS
DLRLPAHGGHRLAASPGSAAIEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=209916 BI317_RS18150 WP_174555994.1 3965095..3966549(+) (pilR) [Xanthomonas hortorum pv. gardneri strain ICMP 7383]
GTGGGCCCAAACCCCGACGACAATTGTCGTCCGTCATCACGCTGGGCTATCGTGCGCACCATGAGCGAACCCAAAAGTGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGGATGGGCCTGCGCATCAGCACCG
CTGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAACCCCTACGACCTGTGCCTGACCGACATGCGCTTGCCCGAT
GGCAACGGCATCGAACTGGTCACCGAAATCTCAAAGCAATATCCGCAGACCCCGGTGGCGATGATCACCGCGTTCGGCAG
CATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGTGGACATCAGCGTGCTGCGCG
GCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCGCCGCCGCCGCCGGAACAGGCCAGCCGC
CTGCTCGGCGACTCCAGCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTGTACAT
CGTCGGCGAATCGGGCGTGGGCAAGGAGTTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTGAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAAGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTTCAGGCCGCGCATGGCGGTACGCTGTTTCTGGACGAAGTGGCCGAATTGCCGCT
GCAGATGCAGGTCAAACTGCTGCGCGCCATCCAGGAGAAATCGGTACGCCCGGTCGGTGCCTCCACCGAATCGCTGGTGG
ACGTGCGCATCCTCTCGGCCACCCACAAGGACCTCGGCGACCTGGTCTCCGACGGCCGTTTCCGCCACGACCTGTACTAC
CGCATCAACGTGATCGAACTGCGCGTGCCGCCCCTGCGCGAACGCAGCGGCGACCTGCCGCAACTGGCCGCCGCCATCAT
CGCGCGCCTGGCACGCAGCCATGGCCGCCCGATTCCGCTACTGACCCAATCCGCGCTCGACGCGCTGGACACATACGGCT
TCCCCGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCAGC
GACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCAGCCCCGGCAGCGCCGCCATCGAACCGCGCGAAGCCGT
CGTCGACATCGACCCCGCCTCGGCCGCCCTGCCCTCTTACATCGAGCAACTCGAGCGCGCCGCGATCCAGAAAGCGCTGG
AAGAAAACCGCTGGAACAAGACCAGAACCGCCGCGCAGCTAGGCATCACGTTTCGGGCGTTGCGCTACAAGCTGAAGAAG
TTGGGGATGGAGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-135)

Sigma-54 interaction domain (Sigma54_activat)

(162-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment