Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BJD12_RS06965 Genome accession   NZ_CP018725
Coordinates   1608606..1609862 (+) Length   418 a.a.
NCBI ID   WP_058562594.1    Uniprot ID   -
Organism   Xanthomonas vesicatoria ATCC 35937 strain LMG911     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1603606..1614862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD12_RS24145 - 1603632..1603778 (+) 147 WP_005992831.1 hypothetical protein -
  BJD12_RS06945 (BJD12_06945) pilR 1603876..1605270 (+) 1395 WP_005992830.1 sigma-54 dependent transcriptional regulator Regulator
  BJD12_RS06950 (BJD12_06950) pilB 1605461..1607194 (-) 1734 WP_042828050.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD12_RS06955 (BJD12_06955) - 1607257..1607664 (-) 408 WP_042828048.1 pilin -
  BJD12_RS06960 (BJD12_06960) pilA 1607857..1608267 (-) 411 WP_005992828.1 pilin Machinery gene
  BJD12_RS06965 (BJD12_06965) pilC 1608606..1609862 (+) 1257 WP_058562594.1 type II secretion system F family protein Machinery gene
  BJD12_RS06970 (BJD12_06970) - 1609869..1610732 (+) 864 WP_005992825.1 A24 family peptidase -
  BJD12_RS06975 (BJD12_06975) coaE 1610746..1611351 (+) 606 WP_005992824.1 dephospho-CoA kinase -
  BJD12_RS06980 (BJD12_06980) - 1611424..1612758 (-) 1335 WP_005992823.1 HAMP domain-containing sensor histidine kinase -
  BJD12_RS06985 (BJD12_06985) - 1612751..1613428 (-) 678 WP_003490678.1 response regulator transcription factor -
  BJD12_RS06990 (BJD12_06990) - 1613459..1613953 (-) 495 WP_228862180.1 hypothetical protein -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 45455.71 Da        Isoelectric Point: 10.2827

>NTDB_id=209876 BJD12_RS06965 WP_058562594.1 1608606..1609862(+) (pilC) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
MAAVRSVVKTKPASQLEQASPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGITPNLVKVKPKPLFGTAGKKVTAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQIRADIEGGSSLHEAVSRHPVQFDELYRNLVRAGEGAGVLET
VLDTIATYKENIEALKGKIKKALFYPAMVVAVALLVSAILLIFVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWLI
LFVAIGAVAGFIFAYKRSPSMQHGMDRVILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEAA
VLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=209876 BJD12_RS06965 WP_058562594.1 1608606..1609862(+) (pilC) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
ATGGCAGCAGTACGTAGTGTGGTGAAGACTAAACCTGCCTCGCAACTTGAGCAGGCGAGCCCATTTGTCTGGGAGGGAAC
AGACAAGCGCGGCGTAAAGATGAAGGGTGAACAGACGGCGAAAAACGCCAACTTGCTACGTGCCGAGCTACGTAGGCAAG
GGATCACGCCCAATCTCGTGAAGGTAAAACCGAAACCCCTTTTTGGCACTGCCGGCAAGAAGGTGACCGCAAAGGACATA
TCCTTCTTCAGCCGGCAAATGGCGACGATGATGAAGTCCGGCGTCCCTATTGTCGGCGCACTTGAGATCATCGGCAGCGG
CCAGAAGAATCCGCGTATGCGGAACATGGTCGGGCAAATCCGTGCGGATATTGAAGGAGGTTCTTCATTGCATGAAGCGG
TCAGCAGGCATCCGGTGCAGTTTGACGAGCTCTACAGAAATCTCGTCAGAGCTGGCGAAGGCGCAGGCGTTTTGGAAACG
GTGCTGGATACCATAGCAACCTACAAGGAGAACATTGAGGCACTTAAGGGCAAGATCAAAAAAGCCTTGTTCTATCCGGC
GATGGTTGTCGCAGTGGCACTACTTGTCAGCGCGATCCTACTCATCTTTGTCGTGCCTCAATTTGAGGATGTGTTCAAGG
GTTTCGGCGCCGAACTCCCCGCGTTTACCCAGATGATTGTGAACATGTCACGCTTTATGGTGTCTTGGTGGTGGCTGATT
CTTTTTGTCGCAATCGGCGCGGTTGCCGGCTTCATATTCGCCTACAAGCGCTCTCCTTCAATGCAACATGGAATGGACCG
GGTCATCCTCAAAGTGCCGATCATCGGTCAGATCATGCACAACAGCTCCATTGCACGTTTTGCGCGGACTACTGCAGTGA
CGTTCAAAGCCGGCGTACCGCTTGTCGAAGCGTTGAGCATTGTGGCCGGCGCAACCGGCAACTCAGTTTACGAAGCTGCC
GTACTGCGTATGCGAGATGATGTCTCGGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCACAT
GGTGGTTCAGATGACTGCCATCGGCGAAGAGGCTGGCGCGCTGGATGCAATGCTGTTCAAGGTCGCCGAATACTTCGAAC
AGGAGGTCAACAACGCAGTTGACGCTCTGAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACTATCGTCGGC
GGTATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(83-206)

Type II secretion system (T2SS), protein F (T2SSF)

(287-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.217

97.129

0.507
  pilC Pseudomonas stutzeri DSM 10701

52.764

95.215

0.502
  pilC Acinetobacter baylyi ADP1

50.86

97.368

0.495
  pilC Acinetobacter baumannii D1279779

51.385

94.976

0.488
  pilG Neisseria gonorrhoeae MS11

44.361

95.455

0.423
  pilG Neisseria meningitidis 44/76-A

43.86

95.455

0.419
  pilC Vibrio cholerae strain A1552

41.133

97.129

0.4
  pilC Vibrio campbellii strain DS40M4

40.943

96.411

0.395

Multiple sequence alignment