Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   BJD12_RS06945 Genome accession   NZ_CP018725
Coordinates   1603876..1605270 (+) Length   464 a.a.
NCBI ID   WP_005992830.1    Uniprot ID   F0BE37
Organism   Xanthomonas vesicatoria ATCC 35937 strain LMG911     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1598876..1610270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJD12_RS06930 (BJD12_06930) sucD 1599603..1600477 (-) 875 Protein_1313 succinate--CoA ligase subunit alpha -
  BJD12_RS06935 (BJD12_06935) sucC 1600502..1601671 (-) 1170 WP_005992833.1 ADP-forming succinate--CoA ligase subunit beta -
  BJD12_RS06940 (BJD12_06940) - 1601903..1603516 (+) 1614 WP_005992832.1 HAMP domain-containing sensor histidine kinase -
  BJD12_RS24145 - 1603632..1603778 (+) 147 WP_005992831.1 hypothetical protein -
  BJD12_RS06945 (BJD12_06945) pilR 1603876..1605270 (+) 1395 WP_005992830.1 sigma-54 dependent transcriptional regulator Regulator
  BJD12_RS06950 (BJD12_06950) pilB 1605461..1607194 (-) 1734 WP_042828050.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BJD12_RS06955 (BJD12_06955) - 1607257..1607664 (-) 408 WP_042828048.1 pilin -
  BJD12_RS06960 (BJD12_06960) pilA 1607857..1608267 (-) 411 WP_005992828.1 pilin Machinery gene
  BJD12_RS06965 (BJD12_06965) pilC 1608606..1609862 (+) 1257 WP_058562594.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50185.59 Da        Isoelectric Point: 6.4414

>NTDB_id=209873 BJD12_RS06945 WP_005992830.1 1603876..1605270(+) (pilR) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
MSEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALDTYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=209873 BJD12_RS06945 WP_005992830.1 1603876..1605270(+) (pilR) [Xanthomonas vesicatoria ATCC 35937 strain LMG911]
ATGAGCGAACCCAAAAGTGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGTAT
GGGCCTGCGCATCAGCACTGCAGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAGCAACCCGTACGATCTGTGCCTGA
CCGACATGCGGCTGCCTGACGGCAACGGCATCGAACTGGTCACCGAAATCGCGAAGCACTACCCGCAAACACCGGTGGCC
ATGATCACCGCGTTCGGCAGCATGGATCTGGCGGTGGAGGCGCTGAAGGCCGGCGCATTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCACCGCCCCCGCCGC
CGCCCGAACAGGCCAGCCGCCTGCTTGGTGATTCGACCGCGATGGAGAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTGTATATCGTCGGCGAATCCGGCGTGGGCAAGGAGCTGGTGGCACGCACCATCCATGAGCAAGGCGC
GCGCGCTGCCGGCCCGTTCGTGCCGGTGAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGGCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCTGCACACGGCGGCACGTTGTTCCTGGAC
GAAGTGGCCGAGTTGCCGCTGCAGATGCAGGTCAAATTGCTGCGCGCGATCCAGGAAAAATCGGTCCGCCCAGTCGGCGC
CTCCGGCGAAACGCTGGTAGACGTGCGCATCCTCTCGGCCACGCATAAGGACCTCGGCGACCTGGTCTCCGACGGCCGCT
TCCGCCACGACCTCTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCGGTGGCGATCTGCCG
CAACTGGCTGCGGCCATCATTGCGCGCCTTGCACGCAGCCATGGCCGGCCGATTCCGCTGCTGACCCAGTCAGCCCTGGA
CGCACTGGATACCTACGGCTTCCCGGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTGGCCGCAACGCCGGGCAGCGCAGCG
GTCGAACCGCGCGAAGCCGTGGTCGACATCGACCCCGCGTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAGGAAAACCGCTGGAACAAGACCAGGACCGCCGCCCAGCTGGGCATCACGTTTCGGGCGC
TGCGCTACAAGTTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(8-115)

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0BE37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

99.784

0.631
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment