Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SAV_RS04715 | Genome accession | NC_002758 |
| Coordinates | 925247..925672 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934774.1 | Uniprot ID | Q932A8 |
| Organism | Staphylococcus aureus subsp. aureus Mu50 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 920247..930672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SAV_RS04645 (SAV0851) | - | 920268..920597 (-) | 330 | WP_000429766.1 | helix-turn-helix domain-containing protein | - |
| SAV_RS04650 (SAV0852) | - | 920758..920949 (+) | 192 | WP_001115060.1 | helix-turn-helix transcriptional regulator | - |
| SAV_RS04655 | - | 921038..921181 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| SAV_RS04660 (SAV0854) | - | 921171..921380 (-) | 210 | WP_000642492.1 | hypothetical protein | - |
| SAV_RS04665 (SAV0855) | - | 921437..922216 (+) | 780 | WP_001148557.1 | phage antirepressor | - |
| SAV_RS04670 (SAV0856) | tscA | 922217..922441 (+) | 225 | WP_000187184.1 | type II toxin-antitoxin system antitoxin TscA | - |
| SAV_RS04675 (SAV0857) | - | 922481..922624 (+) | 144 | WP_000939498.1 | hypothetical protein | - |
| SAV_RS04680 (SAV0858) | - | 922646..923293 (-) | 648 | WP_001838167.1 | hypothetical protein | - |
| SAV_RS04685 (SAV0859) | - | 923364..923585 (+) | 222 | WP_000977378.1 | hypothetical protein | - |
| SAV_RS04690 | - | 923578..923739 (+) | 162 | WP_000066007.1 | DUF1270 domain-containing protein | - |
| SAV_RS04695 (SAV0860) | - | 923832..924134 (+) | 303 | WP_000165363.1 | DUF2482 family protein | - |
| SAV_RS04700 | - | 924139..924399 (+) | 261 | WP_000291068.1 | DUF1108 family protein | - |
| SAV_RS04705 (SAV0862) | - | 924409..924630 (+) | 222 | WP_000815401.1 | DUF2483 family protein | - |
| SAV_RS04710 | - | 924623..925247 (+) | 625 | Protein_880 | DUF1071 domain-containing protein | - |
| SAV_RS04715 (SAV0864) | ssb | 925247..925672 (+) | 426 | WP_000934774.1 | single-stranded DNA-binding protein | Machinery gene |
| SAV_RS04720 (SAV0865) | - | 925683..926234 (+) | 552 | WP_001004505.1 | NUMOD4 domain-containing protein | - |
| SAV_RS04725 (SAV0866) | - | 926235..926909 (+) | 675 | WP_001121803.1 | putative HNHc nuclease | - |
| SAV_RS04730 (SAV0867) | - | 927049..927330 (-) | 282 | WP_000414755.1 | hypothetical protein | - |
| SAV_RS04735 (SAV0868) | - | 927395..928126 (+) | 732 | WP_000132051.1 | helix-turn-helix domain-containing protein | - |
| SAV_RS04740 (SAV0869) | - | 928139..928924 (+) | 786 | WP_000443353.1 | ATP-binding protein | - |
| SAV_RS04745 (SAV0870) | - | 928921..929079 (+) | 159 | WP_000628836.1 | hypothetical protein | - |
| SAV_RS04750 (SAV0871) | - | 929092..929313 (+) | 222 | WP_001123695.1 | DUF3269 family protein | - |
| SAV_RS04755 (SAV0872) | - | 929323..929727 (+) | 405 | WP_000049784.1 | DUF1064 domain-containing protein | - |
| SAV_RS04760 | - | 929732..929918 (+) | 187 | Protein_890 | DUF3113 family protein | - |
| SAV_RS04765 (SAV0873) | - | 929919..930290 (+) | 372 | WP_001140289.1 | SA1788 family PVL leukocidin-associated protein | - |
| SAV_RS04770 (SAV0874) | - | 930291..930539 (+) | 249 | WP_001126846.1 | phi PVL orf 51-like protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15909.51 Da Isoelectric Point: 6.3751
>NTDB_id=20939 SAV_RS04715 WP_000934774.1 925247..925672(+) (ssb) [Staphylococcus aureus subsp. aureus Mu50]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQNNNYQQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=20939 SAV_RS04715 WP_000934774.1 925247..925672(+) (ssb) [Staphylococcus aureus subsp. aureus Mu50]
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAACAGTATTAGTAGGACGATTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTATGAAAACAAAGACGGGCAACGTGTATTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAACAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.353 |
100 |
0.631 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
82.243 |
75.887 |
0.624 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
43.262 |
100 |
0.433 |
| ssbA | Streptococcus mutans UA159 |
42.553 |
100 |
0.426 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |