Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BS101_RS21745 Genome accession   NZ_CP018335
Coordinates   4436878..4437318 (-) Length   146 a.a.
NCBI ID   WP_073540976.1    Uniprot ID   A0A1L5FE87
Organism   Clostridium kluyveri strain JZZ     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4431878..4442318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS101_RS21720 (BS101_21700) rplI 4432695..4433138 (-) 444 WP_012104217.1 50S ribosomal protein L9 -
  BS101_RS21725 (BS101_21705) - 4433139..4435124 (-) 1986 WP_073540970.1 DHH family phosphoesterase -
  BS101_RS21730 (BS101_21710) - 4435143..4436129 (-) 987 WP_073540972.1 YybS family protein -
  BS101_RS21735 (BS101_21715) - 4436141..4436458 (-) 318 WP_073540974.1 MazG-like family protein -
  BS101_RS21740 (BS101_21720) rpsR 4436602..4436856 (-) 255 WP_012104221.1 30S ribosomal protein S18 -
  BS101_RS21745 (BS101_21725) ssbA 4436878..4437318 (-) 441 WP_073540976.1 single-stranded DNA-binding protein Machinery gene
  BS101_RS21750 (BS101_21730) rpsF 4437331..4437618 (-) 288 WP_012104223.1 30S ribosomal protein S6 -
  BS101_RS21755 (BS101_21735) - 4437748..4437957 (-) 210 WP_073540978.1 DUF951 domain-containing protein -
  BS101_RS21760 (BS101_21740) - 4437962..4438816 (-) 855 WP_073540980.1 mechanosensitive ion channel family protein -
  BS101_RS21765 (BS101_21745) - 4439038..4440420 (+) 1383 WP_207649440.1 DDE-type integrase/transposase/recombinase -
  BS101_RS21770 (BS101_21750) ytvI 4441047..4442102 (+) 1056 WP_073540984.1 sporulation integral membrane protein YtvI -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16532.55 Da        Isoelectric Point: 4.6223

>NTDB_id=208155 BS101_RS21745 WP_073540976.1 4436878..4437318(-) (ssbA) [Clostridium kluyveri strain JZZ]
MNKVVLIGRLTKDPELRFTPGMGKAVTTFTIAVDRRFTRDGQREADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRS
YESRDGIRKYVTEVIAEEVQFLEWGQKSVRDNNTEVLSEDFGKDSSFNEDIYGEDITPVDEGDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=208155 BS101_RS21745 WP_073540976.1 4436878..4437318(-) (ssbA) [Clostridium kluyveri strain JZZ]
TTGAATAAAGTTGTTTTAATTGGAAGATTAACTAAAGATCCGGAATTAAGATTTACACCAGGAATGGGAAAAGCAGTTAC
TACCTTTACTATAGCTGTTGATAGAAGATTTACTAGAGATGGACAGAGAGAGGCAGACTTTATTCCCATTGTTGTATGGG
GAAAACAAGCTGAATCTACTGCTAATTATATGAGTAAAGGAAAGCTTATAGGCATTAGTGGCAGAATCCAAACTAGAAGT
TATGAATCTAGAGACGGTATTAGAAAATATGTTACTGAAGTTATTGCAGAAGAAGTCCAATTTCTTGAATGGGGACAGAA
GTCTGTAAGAGACAATAACACTGAAGTTCTATCTGAAGATTTTGGTAAAGACTCAAGTTTTAATGAAGATATCTACGGAG
AAGATATTACTCCAGTTGATGAGGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L5FE87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.349

100

0.534
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

78.082

0.411
  ssbA Streptococcus mutans UA159

49.138

79.452

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.696

78.767

0.384
  ssb Latilactobacillus sakei subsp. sakei 23K

53.846

71.233

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.548

0.377
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.826

78.767

0.377
  ssbB/cilA Streptococcus mitis SK321

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae D39

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae R6

46.957

78.767

0.37

Multiple sequence alignment