Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   TE101_RS14730 Genome accession   NZ_CP018321
Coordinates   3385281..3386489 (+) Length   402 a.a.
NCBI ID   WP_101565572.1    Uniprot ID   -
Organism   Alteromonas macleodii strain Te101     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3380281..3391489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TE101_RS14705 (TE101_14720) ampE 3381138..3382040 (-) 903 WP_101565565.1 beta-lactamase regulator AmpE -
  TE101_RS14710 (TE101_14725) ampD 3382083..3382622 (-) 540 WP_101565567.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  TE101_RS14715 (TE101_14730) - 3382806..3383324 (+) 519 WP_014950400.1 TIGR02281 family clan AA aspartic protease -
  TE101_RS14720 (TE101_14735) nadC 3383357..3384211 (+) 855 WP_101565568.1 carboxylating nicotinate-nucleotide diphosphorylase -
  TE101_RS14725 (TE101_14740) pilA2 3384781..3385212 (+) 432 WP_101565570.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  TE101_RS14730 (TE101_14745) pilC 3385281..3386489 (+) 1209 WP_101565572.1 type II secretion system F family protein Machinery gene
  TE101_RS14735 (TE101_14750) pilD 3386542..3387435 (+) 894 WP_039227988.1 A24 family peptidase Machinery gene
  TE101_RS14740 (TE101_14755) coaE 3387454..3388065 (+) 612 WP_101565574.1 dephospho-CoA kinase -
  TE101_RS14745 (TE101_14760) zapD 3388309..3389061 (+) 753 WP_101565576.1 cell division protein ZapD -
  TE101_RS14750 (TE101_14765) yacG 3389203..3389430 (+) 228 WP_014980027.1 DNA gyrase inhibitor YacG -
  TE101_RS14755 (TE101_14770) - 3389650..3390522 (+) 873 WP_101565577.1 aspartoacylase -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43592.97 Da        Isoelectric Point: 9.2092

>NTDB_id=208059 TE101_RS14730 WP_101565572.1 3385281..3386489(+) (pilC) [Alteromonas macleodii strain Te101]
MAKAASTFTWQGKDRHGQSRKGEVSASSLSEAKNILRRQGISANKVKKLSTPLFGGDKKITAADISVISRQIATMLAAGV
TLIQSLDMISQGHDKAKMRKLLGEVTDEVKSGNPLSSALRKHPEYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPVAVVVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGVFIAIGIGIGGYLFARAY
KKSQKLRDNIDRNILKTPVVGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYRDAILYMRKEVAGGMPMH
VAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFEMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=208059 TE101_RS14730 WP_101565572.1 3385281..3386489(+) (pilC) [Alteromonas macleodii strain Te101]
ATGGCGAAAGCAGCATCTACATTTACATGGCAAGGAAAGGATCGCCATGGACAAAGCCGTAAAGGAGAAGTTTCTGCATC
TTCTCTTTCGGAAGCTAAAAATATCCTTCGTCGCCAAGGAATTTCCGCTAATAAAGTAAAAAAACTTTCAACACCTCTTT
TTGGAGGTGACAAAAAAATTACAGCTGCTGATATTTCTGTAATCTCAAGGCAAATAGCAACGATGCTAGCAGCAGGTGTA
ACTTTAATTCAGTCTTTAGATATGATCTCTCAAGGCCATGATAAGGCAAAGATGAGAAAGCTTCTTGGGGAAGTCACGGA
TGAAGTAAAGTCTGGAAACCCTTTATCCAGTGCGCTGAGAAAGCATCCCGAATATTTCGATGATCTGTATTGTGATTTAG
TTTATACCGGCGAACAGTCAGGCGCACTCGAGACCATTTACGATCGTATTGCTACCTATAAAGAAAAGGCTGAAGCACTT
AAGTCAAAAATTAAAAAAGCGATGTTTTACCCAGTCGCCGTCGTCGTTGTTGCATTCATAGTTACGACTATCTTACTTAT
ATTTGTTGTACCACAATTTGAAGAGATTTTTAGCAGTTTTGGCGCAGAGCTTCCCGCCTTTACACAGTTCGTACTCGCAA
TTTCACGATTTGTTCAAGACTATGGTGTTTTCATAGCGATCGGTATTGGAATTGGTGGATACCTTTTTGCTAGAGCTTAC
AAAAAAAGTCAAAAACTGCGCGACAATATTGACCGCAATATTTTAAAAACACCGGTGGTTGGAGAAATTCTAAAAAAAGC
CAGTATTGCGCGCTTTACCCGAACCCTAGCCACAACTTTTGCAGCAGGTGTGCCGCTTATTGGCGCACTAGAATCCGCCG
CCGGAGCTTCGGGCAACGCGGTATACCGCGATGCCATTTTATACATGCGTAAAGAAGTGGCAGGCGGTATGCCCATGCAC
GTTGCAATGCGCGCTACACAAGTATTCCCTGACATGGTGACGCAGATGATTGCCATTGGTGAGGAGTCGGGCGCGGTTGA
TGAAATGCTTAGTAAAATTGCCACCATATATGAAGCTGAAGTCGATGATATGGTAGACGGTTTAACCAGCCTATTAGAAC
CTATGATCATGGCCGTACTTGGCGTGGTAATCGGCGGCTTGATTGTGGCTATGTACCTCCCTATATTCGAAATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.942

98.756

0.582
  pilC Acinetobacter baumannii D1279779

51.613

100

0.517
  pilC Acinetobacter baylyi ADP1

51.88

99.254

0.515
  pilC Legionella pneumophila strain ERS1305867

51.629

99.254

0.512
  pilC Vibrio cholerae strain A1552

45.592

98.756

0.45
  pilC Vibrio campbellii strain DS40M4

44.335

100

0.448
  pilG Neisseria meningitidis 44/76-A

44.059

100

0.443
  pilG Neisseria gonorrhoeae MS11

43.812

100

0.44
  pilC Thermus thermophilus HB27

36.591

99.254

0.363

Multiple sequence alignment