Detailed information NTG0208060

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: TE101_RS14735
• Genome accession: NZ_CP018321
• Coordinates: 3386542..3387435 (+)
• Length: 297 a.a.
• NCBI ID: WP_039227988.1
• Uniprot ID: -
• Organism: Alteromonas macleodii strain Te101
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3381542..3392435

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TE101_RS14710 (TE101_14725)	ampD	3382083..3382622 (-)	540	WP_101565567.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
TE101_RS14715 (TE101_14730)	-	3382806..3383324 (+)	519	WP_014950400.1	TIGR02281 family clan AA aspartic protease	-
TE101_RS14720 (TE101_14735)	nadC	3383357..3384211 (+)	855	WP_101565568.1	carboxylating nicotinate-nucleotide diphosphorylase	-
TE101_RS14725 (TE101_14740)	pilA2	3384781..3385212 (+)	432	WP_101565570.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
TE101_RS14730 (TE101_14745)	pilC	3385281..3386489 (+)	1209	WP_101565572.1	type II secretion system F family protein	Machinery gene
TE101_RS14735 (TE101_14750)	pilD	3386542..3387435 (+)	894	WP_039227988.1	A24 family peptidase	Machinery gene
TE101_RS14740 (TE101_14755)	coaE	3387454..3388065 (+)	612	WP_101565574.1	dephospho-CoA kinase	-
TE101_RS14745 (TE101_14760)	zapD	3388309..3389061 (+)	753	WP_101565576.1	cell division protein ZapD	-
TE101_RS14750 (TE101_14765)	yacG	3389203..3389430 (+)	228	WP_014980027.1	DNA gyrase inhibitor YacG	-
TE101_RS14755 (TE101_14770)	-	3389650..3390522 (+)	873	WP_101565577.1	aspartoacylase	-
TE101_RS14760 (TE101_14775)	-	3390610..3391899 (-)	1290	WP_101565579.1	methyl-accepting chemotaxis protein	-
TE101_RS14765 (TE101_14780)	-	3391909..3392277 (-)	369	WP_014950410.1	response regulator	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32902.97 Da
• Isoelectric Point: 7.0542

>NTDB_id=208060 TE101_RS14735 WP_039227988.1 3386542..3387435(+) (pilD) [Alteromonas macleodii strain Te101]
MDAIITLSQLYPAVFYSLVFFVSLMVGSFLNVVIYRLPIMMERSWQQEYQSYFSEGEPTPNDKNSSAKEEVFNLVKPDST
CPSCGHKIRAWENVPVISYLFLKGKCAKCKVGISVRYPLVELFTALACTFAAYQFGVTSQALWAVLFTYILVALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQHIFVGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAALGAYTGWQGLPI
IILLSSFVGAIAGILIMVIQNKGKSLAIPFGPYLAVAGWLTLLFKDAIITTYLDYVL

Nucleotide

• Length: 894 bp

>NTDB_id=208060 TE101_RS14735 WP_039227988.1 3386542..3387435(+) (pilD) [Alteromonas macleodii strain Te101]
ATGGACGCGATAATTACGCTTAGTCAGCTTTACCCTGCTGTATTCTATTCCCTAGTCTTTTTTGTAAGTTTAATGGTTGG
CAGTTTCTTGAACGTGGTGATTTACCGCTTGCCTATTATGATGGAACGCAGCTGGCAGCAAGAGTACCAAAGCTATTTTA
GCGAGGGTGAGCCGACACCTAATGATAAAAACTCATCAGCGAAAGAAGAAGTATTTAACCTTGTAAAACCAGACAGCACA
TGCCCTAGCTGCGGCCACAAGATTCGCGCATGGGAAAATGTTCCTGTTATTAGCTACCTGTTCCTTAAAGGTAAATGCGC
TAAATGCAAAGTTGGAATATCAGTTCGATACCCGCTGGTTGAATTGTTTACTGCTTTAGCCTGTACGTTTGCGGCCTACC
AATTTGGTGTCACATCGCAAGCACTATGGGCCGTATTGTTTACTTACATACTCGTTGCTCTGCTGTTTATTGACTTAGAT
AAGATGCTATTACCTGACCAGTTGACACTGCCTCTACTGTGGTTAGGGTTATTGTTGAGCACGCAACACATTTTTGTAGG
TACCACCGACGCTATTATCGGCGCAGCGGCGGGTTACTTAAGTTTATGGTCTGTTTATTGGCTATTTAAACTTGCCACTG
GCAAAGAAGGCATGGGCTATGGCGATTTCAAGCTGCTCGCCGCACTTGGTGCTTATACGGGCTGGCAAGGTTTGCCCATT
ATTATTTTGCTCTCTTCGTTTGTTGGCGCAATTGCAGGTATACTCATAATGGTGATTCAAAACAAAGGTAAGTCGCTGGC
AATTCCTTTTGGTCCCTATCTCGCAGTGGCGGGTTGGCTGACACTGCTTTTTAAAGATGCCATTATTACCACCTATCTTG
ATTACGTACTTTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.088	95.96	0.529
pilD	Vibrio campbellii strain DS40M4	53.103	97.643	0.519
pilD	Acinetobacter baumannii D1279779	50.179	93.939	0.471
pilD	Acinetobacter nosocomialis M2	49.821	93.939	0.468
pilD	Neisseria gonorrhoeae MS11	47.191	89.899	0.424