Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BSR55_RS19520 Genome accession   NZ_CP018259
Coordinates   4124742..4125974 (+) Length   410 a.a.
NCBI ID   WP_100886086.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119742..4130974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19480 (BSR55_19480) rimP 4120261..4120785 (-) 525 WP_004826368.1 ribosome maturation factor RimP -
  BSR55_RS19505 (BSR55_19505) secG 4121578..4121919 (-) 342 WP_004826367.1 preprotein translocase subunit SecG -
  BSR55_RS19510 (BSR55_19510) tpiA 4121929..4122723 (-) 795 WP_100886084.1 triose-phosphate isomerase -
  BSR55_RS19515 (BSR55_19515) pilB 4123002..4124714 (+) 1713 WP_100886085.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSR55_RS19520 (BSR55_19520) pilC 4124742..4125974 (+) 1233 WP_100886086.1 type II secretion system F family protein Machinery gene
  BSR55_RS19525 (BSR55_19525) pilD 4125977..4126858 (+) 882 WP_171266140.1 prepilin peptidase Machinery gene
  BSR55_RS19530 (BSR55_19530) coaE 4126884..4127483 (+) 600 WP_100886087.1 dephospho-CoA kinase -
  BSR55_RS19535 (BSR55_19535) - 4127530..4128450 (-) 921 WP_100886088.1 DMT family transporter -
  BSR55_RS19540 (BSR55_19540) rlmB 4128491..4129243 (-) 753 WP_009584411.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BSR55_RS19545 (BSR55_19545) - 4129387..4129710 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45194.63 Da        Isoelectric Point: 9.8567

>NTDB_id=207802 BSR55_RS19520 WP_100886086.1 4124742..4125974(+) (pilC) [Acinetobacter bereziniae strain XH901]
MAAKKAQMMPTFAYDGVDRKGIKVKGELPARNMALAKVTLRKQGITIKTIREKKKNIFEGLMKKGISTLDITIFTRQLAT
MMKAGVPLVQSFEIVAEGLENPSMREVVLGIKSEVEGGNTFAGALRKYPRYFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPITVIIVAFIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVSMSDWTQKYWFVLLLMIGIMIT
AVLEAKKRSQKFRDFLDRTALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIEALESTAGATNNVVYEQAVMKIREDVS
TGQQLNFAMRVSNKFPAMAVQMVAIGEESGALDAMLDKVATHFENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVVGG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=207802 BSR55_RS19520 WP_100886086.1 4124742..4125974(+) (pilC) [Acinetobacter bereziniae strain XH901]
ATGGCAGCTAAAAAAGCGCAAATGATGCCTACCTTTGCTTATGACGGGGTTGATCGTAAAGGAATCAAGGTCAAGGGAGA
ATTGCCTGCACGGAATATGGCACTTGCCAAAGTTACGTTGAGAAAGCAAGGCATTACCATTAAAACCATTCGAGAAAAAA
AGAAAAATATTTTTGAAGGTTTAATGAAAAAGGGAATATCAACTTTAGATATTACCATTTTTACCCGCCAACTTGCTACT
ATGATGAAAGCGGGTGTGCCTTTGGTACAAAGTTTTGAAATTGTTGCCGAAGGTTTAGAAAACCCTTCTATGCGAGAAGT
TGTTTTAGGAATCAAAAGTGAAGTTGAAGGCGGAAATACTTTTGCTGGGGCACTAAGAAAATATCCCCGCTACTTTGATA
ACTTGTTTTGTTCCTTGGTGGAGTCAGGAGAGCAATCAGGTGCTTTAGAGACTATGCTAGACCGTGTCGCGATCTATAAA
GAAAAAAGTGAGCTGTTAAAACAGAAAATTAAAAAGGCCATGAAGTATCCTATTACAGTTATTATTGTCGCTTTCATTGT
CACCATTATCCTTATGGTCAAGGTTGTCCCAGTATTCCAGGATCTCTTTAGCTCTTTTGGTGCAGATCTTCCTGCTTTTA
CTCAAATGGTAGTCAGTATGTCAGACTGGACACAAAAATATTGGTTTGTTCTTTTATTAATGATAGGGATTATGATTACC
GCAGTTTTAGAAGCAAAAAAACGTAGTCAAAAATTTCGAGACTTTTTAGATCGAACCGCACTCAAATTGCCAATTTTTGG
TGATTTGGTCTATAAAGCGATTATTGCACGTTATAGCCGTACCTTAGCCACCACCTTTGCAGCAGGGGTTCCCCTCATTG
AAGCATTAGAATCCACTGCTGGGGCAACCAACAATGTGGTCTATGAACAAGCGGTGATGAAAATCCGTGAAGATGTCTCC
ACAGGACAACAATTAAATTTTGCCATGCGTGTCAGTAACAAATTTCCAGCTATGGCTGTGCAAATGGTCGCGATCGGTGA
AGAGTCTGGTGCACTGGATGCCATGCTCGATAAAGTCGCTACACATTTTGAAAATGAAGTGGATAATGCAGTTGATGGTT
TAACCTCAATGATGGAACCTTTGATTATGGCAATCTTAGGCGTATTGGTTGGTGGTCTTGTAATTGCCATGTATCTTCCA
ATTTTCCAAATGGGTTCAGTTGTTGGCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

86.275

99.512

0.859
  pilC Acinetobacter baylyi ADP1

84.069

99.512

0.837
  pilC Pseudomonas stutzeri DSM 10701

60.837

99.024

0.602
  pilC Legionella pneumophila strain ERS1305867

52.593

98.78

0.52
  pilG Neisseria gonorrhoeae MS11

45.98

97.073

0.446
  pilG Neisseria meningitidis 44/76-A

45.98

97.073

0.446
  pilC Vibrio cholerae strain A1552

41.912

99.512

0.417
  pilC Vibrio campbellii strain DS40M4

40.988

98.78

0.405
  pilC Thermus thermophilus HB27

38.155

97.805

0.373

Multiple sequence alignment