Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   BSR55_RS19515 Genome accession   NZ_CP018259
Coordinates   4123002..4124714 (+) Length   570 a.a.
NCBI ID   WP_100886085.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4118002..4129714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19475 (BSR55_19475) nusA 4118742..4120226 (-) 1485 WP_004826370.1 transcription termination factor NusA -
  BSR55_RS19480 (BSR55_19480) rimP 4120261..4120785 (-) 525 WP_004826368.1 ribosome maturation factor RimP -
  BSR55_RS19505 (BSR55_19505) secG 4121578..4121919 (-) 342 WP_004826367.1 preprotein translocase subunit SecG -
  BSR55_RS19510 (BSR55_19510) tpiA 4121929..4122723 (-) 795 WP_100886084.1 triose-phosphate isomerase -
  BSR55_RS19515 (BSR55_19515) pilB 4123002..4124714 (+) 1713 WP_100886085.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSR55_RS19520 (BSR55_19520) pilC 4124742..4125974 (+) 1233 WP_100886086.1 type II secretion system F family protein Machinery gene
  BSR55_RS19525 (BSR55_19525) pilD 4125977..4126858 (+) 882 WP_171266140.1 prepilin peptidase Machinery gene
  BSR55_RS19530 (BSR55_19530) coaE 4126884..4127483 (+) 600 WP_100886087.1 dephospho-CoA kinase -
  BSR55_RS19535 (BSR55_19535) - 4127530..4128450 (-) 921 WP_100886088.1 DMT family transporter -
  BSR55_RS19540 (BSR55_19540) rlmB 4128491..4129243 (-) 753 WP_009584411.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BSR55_RS19545 (BSR55_19545) - 4129387..4129710 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 63207.75 Da        Isoelectric Point: 4.9635

>NTDB_id=207801 BSR55_RS19515 WP_100886085.1 4123002..4124714(+) (pilB) [Acinetobacter bereziniae strain XH901]
MSMQNGSPKFSGYIRRLVDEGFLSAQQMKDALTSAQKSKTHLVPYLIEKLAISPLLIAEMISSEFGEPIFDLDSFNPEML
PKDIVDAGLISKHGVIPLVQRGNILYVATSDPTNIEALDAIRFSCGLNIEPIIVEHHKLEKIIAKHFTVEESFNFGDEDF
DVDIIATDENEPAELDEETAEEEAPIVKYVNKLLIDAIRMGASDLHFEPYEKSYRVRYRVDGVLRTITNPPLQLANRLAS
RLKVMSQMDISEKRIPQDGRIKLKLSKTKAIDFRVNSLPTLFGEKLVLRILDPSSAMLGIDALGYEEDQKALFMEALEKP
QGMLLITGPTGSGKTVSLYTGLNILNTESSNISTAEDPVEINLEGINQVNVNLKAGLTFSVALKSFLRQDPDIIMVGEIR
DLETAEIAIKAAQTGHMVMSTLHTNSAPETLTRLRNMGVPSFNIATSVNLVIAQRLARRLCNHCKAPIEIPKQSLLELGF
TEQDLNHPDLQIFQPVGCSECREGYKGRVGIYEVMKVTPEISKIIMEDGNALQIAAASEKLGFDNLRRSGLKKVMNGLTS
LQEINRVTSE

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=207801 BSR55_RS19515 WP_100886085.1 4123002..4124714(+) (pilB) [Acinetobacter bereziniae strain XH901]
ATGTCTATGCAAAATGGTTCACCTAAGTTTTCGGGTTATATCCGTCGCTTAGTCGATGAAGGCTTTTTATCTGCTCAGCA
AATGAAAGATGCCTTAACAAGTGCTCAAAAAAGTAAAACCCATTTGGTGCCTTACCTGATTGAGAAATTAGCGATCTCAC
CATTGCTGATCGCTGAAATGATCTCCTCCGAGTTCGGTGAGCCTATTTTTGATCTAGACAGTTTTAACCCTGAAATGTTG
CCCAAGGACATTGTGGACGCCGGTTTGATCAGTAAACATGGGGTGATTCCATTGGTGCAACGCGGTAATATCTTATATGT
TGCAACCAGCGACCCCACCAATATCGAGGCACTTGATGCGATTCGTTTTAGTTGTGGTCTAAATATTGAACCAATCATCG
TTGAACATCATAAATTAGAAAAAATTATAGCCAAGCATTTTACTGTAGAAGAAAGCTTTAATTTTGGCGATGAAGATTTT
GATGTTGATATTATTGCAACAGATGAAAATGAACCCGCAGAGCTTGATGAAGAAACTGCTGAAGAAGAAGCGCCGATTGT
TAAATATGTCAATAAACTGCTAATTGATGCCATTCGAATGGGCGCCTCAGACTTACATTTTGAACCTTATGAAAAAAGTT
ATCGTGTTCGCTATCGCGTAGATGGTGTACTTAGAACCATTACCAATCCCCCACTGCAATTGGCGAATCGTTTAGCATCC
CGTTTAAAAGTCATGTCACAAATGGATATTTCAGAGAAACGTATTCCTCAAGATGGGCGTATTAAGCTAAAACTATCCAA
AACCAAAGCTATTGATTTTCGTGTTAACTCACTGCCAACATTGTTTGGTGAAAAATTAGTTCTACGTATTCTTGATCCTT
CCAGTGCCATGTTAGGGATTGATGCGTTGGGCTATGAAGAAGATCAAAAAGCTTTATTTATGGAAGCTCTAGAAAAACCA
CAAGGCATGTTATTGATTACAGGTCCAACAGGGTCTGGTAAAACCGTATCGTTGTATACAGGCTTAAATATCCTCAATAC
CGAAAGTTCCAATATTTCAACCGCAGAAGACCCTGTCGAGATTAACTTGGAGGGGATTAACCAAGTCAACGTCAATCTTA
AAGCAGGATTGACCTTTTCGGTCGCACTAAAATCATTTCTTCGTCAAGATCCAGATATTATTATGGTCGGGGAGATTCGA
GACCTTGAAACGGCTGAAATTGCAATCAAAGCAGCCCAAACAGGTCATATGGTGATGTCCACACTGCATACCAACAGTGC
ACCTGAAACCTTAACCCGTTTGCGCAATATGGGCGTGCCATCCTTCAATATTGCAACATCGGTCAATCTTGTGATTGCAC
AACGTCTTGCTCGGCGCTTATGCAACCACTGTAAAGCACCTATTGAAATTCCGAAACAAAGTTTGTTAGAACTGGGCTTT
ACTGAACAAGACTTAAACCACCCTGATTTACAGATTTTTCAGCCTGTAGGCTGTTCTGAATGTAGAGAAGGTTATAAAGG
ACGAGTCGGTATTTATGAGGTGATGAAAGTAACACCTGAAATTTCAAAAATTATCATGGAAGATGGCAACGCACTGCAAA
TTGCAGCAGCATCTGAAAAATTGGGGTTTGATAATTTGCGACGTTCGGGTTTAAAAAAGGTTATGAATGGTTTAACGTCT
TTACAAGAAATTAACCGCGTAACCAGCGAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(17-149)

Type II/IV secretion system protein (T2SSE)

(192-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

80.42

100

0.807
  pilB Acinetobacter baylyi ADP1

75.263

100

0.753
  pilB Legionella pneumophila strain ERS1305867

51.389

100

0.519
  pilF Neisseria gonorrhoeae MS11

49.383

99.474

0.491
  pilB Vibrio parahaemolyticus RIMD 2210633

48.654

97.719

0.475
  pilB Vibrio cholerae strain A1552

48.463

97.018

0.47
  pilB Vibrio campbellii strain DS40M4

49.712

91.404

0.454
  pilF Thermus thermophilus HB27

37.391

100

0.377
  pilB/pilB1 Synechocystis sp. PCC 6803

34.584

100

0.372

Multiple sequence alignment