Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   BSR55_RS19525 Genome accession   NZ_CP018259
Coordinates   4125977..4126858 (+) Length   293 a.a.
NCBI ID   WP_171266140.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain XH901     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4120977..4131858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR55_RS19505 (BSR55_19505) secG 4121578..4121919 (-) 342 WP_004826367.1 preprotein translocase subunit SecG -
  BSR55_RS19510 (BSR55_19510) tpiA 4121929..4122723 (-) 795 WP_100886084.1 triose-phosphate isomerase -
  BSR55_RS19515 (BSR55_19515) pilB 4123002..4124714 (+) 1713 WP_100886085.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSR55_RS19520 (BSR55_19520) pilC 4124742..4125974 (+) 1233 WP_100886086.1 type II secretion system F family protein Machinery gene
  BSR55_RS19525 (BSR55_19525) pilD 4125977..4126858 (+) 882 WP_171266140.1 prepilin peptidase Machinery gene
  BSR55_RS19530 (BSR55_19530) coaE 4126884..4127483 (+) 600 WP_100886087.1 dephospho-CoA kinase -
  BSR55_RS19535 (BSR55_19535) - 4127530..4128450 (-) 921 WP_100886088.1 DMT family transporter -
  BSR55_RS19540 (BSR55_19540) rlmB 4128491..4129243 (-) 753 WP_009584411.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BSR55_RS19545 (BSR55_19545) - 4129387..4129710 (-) 324 WP_004718357.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 293 a.a.        Molecular weight: 32760.22 Da        Isoelectric Point: 7.4285

>NTDB_id=207803 BSR55_RS19525 WP_171266140.1 4125977..4126858(+) (pilD) [Acinetobacter bereziniae strain XH901]
MNMFHDFLNLLIQSPTALFIVVGLVSLCVGSFLNVVIYRTPKMMEKEWRQEWQAECQLLAGSQQIVIDEEKLSLSQPAST
CPQCKTPIRWYQNIPVISWLALRGKCASCQNPISIRYPLVELLTAICSLTVVAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAVGLGINSFEIYTTANAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGEQIMKIYLGQ

Nucleotide


Download         Length: 882 bp        

>NTDB_id=207803 BSR55_RS19525 WP_171266140.1 4125977..4126858(+) (pilD) [Acinetobacter bereziniae strain XH901]
ATGAATATGTTTCACGATTTTTTAAACCTTCTGATTCAATCACCGACTGCACTTTTTATTGTTGTCGGTCTAGTCAGTCT
ATGTGTCGGGAGTTTCCTGAATGTGGTGATTTATCGCACACCGAAGATGATGGAAAAGGAGTGGCGCCAAGAGTGGCAAG
CAGAATGTCAATTGCTTGCAGGTTCTCAACAGATCGTTATTGATGAAGAAAAGCTGAGTCTGAGTCAACCAGCGTCTACC
TGTCCACAATGCAAAACACCGATTCGCTGGTATCAAAATATCCCAGTGATCAGTTGGTTGGCGTTACGTGGTAAATGTGC
TTCATGTCAAAACCCCATCAGTATCCGCTATCCTTTGGTTGAACTACTGACAGCAATCTGCTCCTTAACCGTTGTTGCAG
TATATGGACCAACACTCCAAATGGTGTTTGGTGTATTACTGACATGGGTGCTGATTACTCTGACTTTTATTGATTTTGAT
ACACAGTTACTACCTGATCGTTTTACCTTAACACTCGCAGCTGTGGGTTTAGGAATTAACTCATTTGAAATATATACCAC
AGCAAATGCTGCAATTTGGGGTTATATTATTGGTTTTCTTTGCCTATGGATTGTCTATTACCTGTTTAAAATCGTGACAG
GCAAGGAAGGTATGGGTTATGGTGACTTTAAGCTTCTTGCTGCACTAGGTGCTTGGATGGGACCGTTGATGCTACCTTTG
ATTATCCTGCTTTCTTCGGTTGTCGGGGCAATCATTGGCATCATCCTGCTAAAAATTCGTAAGGAAAATATTCCTTTTGC
TTTTGGACCTTATATCGCCATTGCGGGTTGGATTGCATTCTTATGGGGCGAACAAATCATGAAGATTTACTTAGGTCAAT
AA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(25-133)

Type IV leader peptidase family (Peptidase_A24)

(146-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter nosocomialis M2

76.042

98.294

0.747
  pilD Acinetobacter baumannii D1279779

76.042

98.294

0.747
  pilD Vibrio campbellii strain DS40M4

54.676

94.881

0.519
  pilD Vibrio cholerae strain A1552

53.623

94.198

0.505
  pilD Neisseria gonorrhoeae MS11

44.128

95.904

0.423

Multiple sequence alignment