Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SMA_0118 Genome accession   HE613569
Coordinates   119455..119850 (+) Length   131 a.a.
NCBI ID   CCF01409.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 114455..124850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0112 proC 115771..116541 (-) 771 CCF01403.1 Pyrroline-5-carboxylate reductase -
  SMA_0113 pepA 116602..117669 (-) 1068 CCF01404.1 Glutamyl aminopeptidase -
  SMA_0114 - 117763..118080 (+) 318 CCF01405.1 Hypothetical protein -
  SMA_0115 ytpP 118073..118390 (+) 318 CCF01406.1 Thioredoxin -
  SMA_0116 ytpR 118399..119025 (+) 627 CCF01407.1 tRNA binding domain protein -
  SMA_0117 - 119116..119334 (-) 219 Protein_116 Hypothetical protein -
  SMA_0118 ssbA 119455..119850 (+) 396 CCF01409.1 Single-stranded DNA-binding protein Machinery gene
  SMA_0119 yeeE 120000..121043 (+) 1044 CCF01410.1 putative transport system permease protein -
  SMA_0120 yeeD 121046..121273 (+) 228 CCF01411.1 Hypothetical protein -
  SMA_0121 yidA 121401..122207 (+) 807 CCF01412.1 Hydrolase, haloacid dehalogenase-like family -
  SMA_0122 rbsB 122361..123326 (+) 966 CCF01413.1 Periplasmic fructose-binding protein component of signal transduction system LevT -
  SMA_0123 yxjM 123326..124642 (+) 1317 CCF01414.1 Fructose sensor histidine kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14951.90 Da        Isoelectric Point: 5.2829

>NTDB_id=20330 SMA_0118 CCF01409.1 119455..119850(+) (ssbA) [Streptococcus macedonicus ACA-DC 198]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGERETDFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRDMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20330 SMA_0118 CCF01409.1 119455..119850(+) (ssbA) [Streptococcus macedonicus ACA-DC 198]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACAGCGCAGCCTGAGCTTGTGACGACTTCAAATGAGAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGACTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGT
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGACATGCGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment