Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   DN94_01975 Genome accession   CP007565
Coordinates   348562..348957 (+) Length   131 a.a.
NCBI ID   AHX74526.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain 138spar     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 343562..353957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DN94_01940 - 343956..344726 (-) 771 AHX74519.1 pyrroline-5-carboxylate reductase -
  DN94_01945 - 344796..345863 (-) 1068 AHX74520.1 glutamyl aminopeptidase -
  DN94_01950 - 346048..346287 (-) 240 AHX74521.1 hypothetical protein -
  DN94_01955 - 346448..346732 (+) 285 AHX74522.1 hypothetical protein -
  DN94_01960 - 346729..347052 (+) 324 AHX74523.1 thioredoxin -
  DN94_01965 - 347085..347711 (+) 627 AHX74524.1 tRNA-binding protein -
  DN94_01970 - 347765..348481 (-) 717 AHX74525.1 SAM-dependent methyltransferase -
  DN94_01975 ssbA 348562..348957 (+) 396 AHX74526.1 single-stranded DNA-binding protein Machinery gene
  DN94_01980 - 349081..349725 (+) 645 AHX74527.1 haloacid dehalogenase -
  DN94_01985 - 349752..351113 (+) 1362 AHX74528.1 sensor protein LytS -
  DN94_01990 - 351094..351834 (+) 741 AHX74529.1 chemotaxis protein CheY -
  DN94_01995 - 352004..352459 (+) 456 AHX74530.1 murein hydrolase transporter LrgA -
  DN94_02000 - 352461..353189 (+) 729 AHX74531.1 antiholin LrgB -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14774.80 Da        Isoelectric Point: 7.0189

>NTDB_id=20291 DN94_01975 AHX74526.1 348562..348957(+) (ssbA) [Streptococcus agalactiae strain 138spar]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20291 DN94_01975 AHX74526.1 348562..348957(+) (ssbA) [Streptococcus agalactiae strain 138spar]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTAAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACTCTTGCGAGCTATGGGACAAAGGGTTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.916

100

0.809
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397

Multiple sequence alignment