Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   SPG_1820 Genome accession   CP001015
Coordinates   1740426..1740821 (-) Length   131 a.a.
NCBI ID   ACF54817.1    Uniprot ID   -
Organism   Streptococcus pneumoniae G54     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1735426..1745821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPG_1814 - 1735771..1736109 (-) 339 ACF56065.1 Transcriptional regulator, putative -
  SPG_1815 - 1736122..1736895 (-) 774 ACF56551.1 conserved domain protein -
  SPG_1816 - 1737422..1737673 (-) 252 ACF55297.1 conserved hypothetical protein -
  SPG_1817 - 1737767..1737976 (-) 210 ACF56802.1 conserved hypothetical protein -
  SPG_1818 groL 1738234..1739856 (-) 1623 ACF56332.1 chaperonin GroL -
  SPG_1819 groS 1739872..1740156 (-) 285 ACF55309.1 chaperonin GroS -
  SPG_1820 ssbB/cilA 1740426..1740821 (-) 396 ACF54817.1 single-strand binding protein Machinery gene
  SPG_1821 - 1740899..1741660 (-) 762 ACF56516.1 oxidoreductase, short chain dehydrogenase/reductase family protein -
  SPG_1822 - 1741693..1742319 (-) 627 ACF56034.1 conserved hypothetical protein -
  SPG_1823 - 1742335..1742652 (-) 318 ACF55034.1 thioredoxin family protein -
  SPG_1824 - 1742649..1742939 (-) 291 ACF56819.1 conserved hypothetical protein -
  SPG_1825 - 1743233..1743376 (-) 144 ACF56293.1 conserved hypothetical protein -
  SPG_1826 - 1743585..1744259 (-) 675 ACF55898.1 conserved hypothetical protein -
  SPG_1827 - 1744265..1744711 (-) 447 ACF55351.1 LytTr DNA-binding domain -
  SPG_1828 - 1744825..1745328 (-) 504 ACF55236.1 conserved hypothetical protein -
  SPG_1829 - 1745325..1745687 (-) 363 ACF55222.1 conserved hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=20218 SPG_1820 ACF54817.1 1740426..1740821(-) (ssbB/cilA) [Streptococcus pneumoniae G54]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20218 SPG_1820 ACF54817.1 1740426..1740821(-) (ssbB/cilA) [Streptococcus pneumoniae G54]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment