Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   SSU05_0134 Genome accession   CP000407
Coordinates   124202..124384 (+) Length   60 a.a.
NCBI ID   ABP89103.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119202..129384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0126 comGA 119727..120677 (+) 951 ABP89096.1 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB Machinery gene
  SSU05_0127 comGB 120589..121626 (+) 1038 ABP89097.1 Type II secretory pathway, component PulF Machinery gene
  SSU05_0128 comGC 121628..121909 (+) 282 ABP89098.1 Competence protein ComGC Machinery gene
  SSU05_0129 comGD 121890..122297 (+) 408 ABP89099.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0130 comGE 122269..122562 (+) 294 ABP89100.1 Type II secretory pathway, pseudopilin PulG Machinery gene
  SSU05_0131 comGF/cglF 122549..122971 (+) 423 ABP89101.1 Competence protein ComGF Machinery gene
  SSU05_0132 comGG 122962..123372 (+) 411 ABP89102.1 hypothetical protein Machinery gene
  SSU05_0133 comGH 123430..124404 (+) 975 ABP89104.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0134 comGH 124202..124384 (+) 183 ABP89103.1 Adenine-specific DNA methylase Machinery gene
  SSU05_0135 - 124434..125621 (+) 1188 ABP89105.1 acetate kinase -
  SSU05_0136 - 125744..126487 (+) 744 ABP89106.1 unknown protein -
  SSU05_0137 - 126543..127799 (+) 1257 ABP89107.1 putative folylpolyglutamate synthetase -
  SSU05_0138 - 127846..128907 (-) 1062 ABP89108.1 Cellulase M and related proteins -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6960.27 Da        Isoelectric Point: 10.4875

>NTDB_id=20127 SSU05_0134 ABP89103.1 124202..124384(+) (comGH) [Streptococcus suis 05ZYH33]
MPCHQTLFGKTAMAKSMFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMLNFKNWKQENAI

Nucleotide


Download         Length: 183 bp        

>NTDB_id=20127 SSU05_0134 ABP89103.1 124202..124384(+) (comGH) [Streptococcus suis 05ZYH33]
TTGCCCTGCCACCAAACTCTCTTTGGGAAGACTGCTATGGCCAAGTCTATGTTTGTCTTGCAAAAGAAAGCTGCAAGATC
GTTGACGCCGTTTGTTTATCCCTTACAAAGTCTTCAAGAACCAGAAGCTATTCAGAAGTTCATGCTCAATTTCAAAAATT
GGAAGCAAGAGAATGCAATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA159

47.273

91.667

0.433
  comGH Streptococcus mutans UA140

48.148

90

0.433

Multiple sequence alignment