Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Spy49_0107 Genome accession   CP000829
Coordinates   113842..114237 (+) Length   131 a.a.
NCBI ID   ACI60458.1    Uniprot ID   -
Organism   Streptococcus pyogenes NZ131     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 108842..119237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Spy49_0101 pepA 109590..110657 (-) 1068 ACI60454.1 Putative glutamyl-aminopeptidase -
  Spy49_0103 - 112439..112732 (+) 294 ACI60455.1 hypothetical protein -
  Spy49_0104 trx.1 112729..113046 (+) 318 ACI60456.1 Putative thioredoxin -
  Spy49_0105 - 113064..113708 (+) 645 ACI60457.1 tRNA binding domain protein -
  Spy49_0107 ssbA 113842..114237 (+) 396 ACI60458.1 Single-stranded DNA-binding protein Machinery gene
  Spy49_0108c - 114497..115138 (-) 642 ACI60459.1 Deoxyadenosine kinase/Deoxyguanosine kinase -
  Spy49_0109c - 115158..116135 (-) 978 ACI60460.1 putative transcriptional regulator -
  Spy49_0110c - 116122..116994 (-) 873 ACI60461.1 33 kDa chaperonin -
  Spy49_0111 nra 117120..118655 (-) 1536 ACI60462.1 Regulatory protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.92 Da        Isoelectric Point: 8.0157

>NTDB_id=20127 Spy49_0107 ACI60458.1 113842..114237(+) (ssbA) [Streptococcus pyogenes NZ131]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLISIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20127 Spy49_0107 ACI60458.1 113842..114237(+) (ssbA) [Streptococcus pyogenes NZ131]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAGCCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATATCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment