Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   SSU05_2090 Genome accession   CP000407
Coordinates   1993290..1993808 (-) Length   172 a.a.
NCBI ID   ABP91056.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988290..1998808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_2085 - 1988809..1989579 (-) 771 ABP91051.1 ATP-binding ABC transport protein -
  SSU05_2086 - 1990133..1991086 (-) 954 ABP91052.1 High-affinity zinc uptake system protein znuA precursor -
  SSU05_2087 - 1991182..1991841 (+) 660 ABP91053.1 putative metal-dependent transcriptional regulator -
  SSU05_2088 - 1991838..1992164 (-) 327 ABP91054.1 hypothetical protein -
  SSU05_2089 - 1992250..1992948 (-) 699 ABP91055.1 hypothetical protein -
  SSU05_2090 comE/blpR 1993290..1993808 (-) 519 ABP91056.1 RevS Regulator
  SSU05_2091 - 1993986..1994177 (-) 192 ABP91057.1 hypothetical protein -
  SSU05_2092 - 1994281..1994478 (-) 198 ABP91058.1 hypothetical protein -
  SSU05_2093 - 1994542..1994985 (-) 444 ABP91059.1 unknown protein -
  SSU05_2094 - 1994987..1997188 (-) 2202 ABP91060.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20177.79 Da        Isoelectric Point: 4.5516

>NTDB_id=20115 SSU05_2090 ABP91056.1 1993290..1993808(-) (comE/blpR) [Streptococcus suis 05ZYH33]
MLNIFVLEDDFFQQSRLENAIRQCVEETSVRYKFLEVFGKPNQLLESIEEAGNHQFFFLDIEIKGEEKKGMEIAKEIRAR
DPYAVIVFVTTHSEFMPVTYRYQVSALDFIDKGLEDSDFQKAVSDVLVHAFENIDHTVAENSFVYKTETAHIQVPFSDIL
YFENHQRFIKSF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=20115 SSU05_2090 ABP91056.1 1993290..1993808(-) (comE/blpR) [Streptococcus suis 05ZYH33]
ATGCTTAATATTTTTGTATTAGAAGATGATTTTTTTCAGCAGAGCAGGTTAGAAAATGCTATTAGGCAGTGTGTTGAAGA
AACGTCAGTAAGGTATAAATTCCTAGAAGTTTTTGGTAAACCAAATCAATTATTGGAATCAATTGAGGAAGCAGGGAATC
ATCAATTTTTCTTTTTAGATATTGAAATAAAAGGAGAAGAAAAGAAAGGAATGGAAATCGCTAAAGAAATCCGGGCTCGA
GATCCTTATGCTGTTATTGTCTTTGTAACAACTCACTCAGAATTTATGCCAGTAACATATCGTTATCAGGTTTCTGCTTT
AGATTTTATAGATAAAGGCCTGGAGGATAGTGACTTTCAAAAGGCAGTATCAGATGTCTTAGTGCATGCTTTTGAAAATA
TTGATCATACTGTAGCTGAAAATTCTTTTGTATACAAAACTGAAACTGCTCATATTCAAGTTCCTTTTAGTGACATCCTT
TATTTTGAAAATCATCAACGATTCATAAAGTCATTTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

55.758

95.93

0.535
  comE/comE1 Streptococcus equinus JB1

45.732

95.349

0.436
  comE/comE2 Streptococcus gordonii strain NCTC7865

44.785

94.767

0.424
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

44.785

94.767

0.424
  comE/comE2 Streptococcus equinus JB1

43.558

94.767

0.413
  comE Streptococcus infantis strain Atu-4

38.554

96.512

0.372
  comE Streptococcus mitis NCTC 12261

38.554

96.512

0.372
  comE Streptococcus mitis SK321

38.554

96.512

0.372
  comE Streptococcus pneumoniae Rx1

38.554

96.512

0.372
  comE Streptococcus pneumoniae D39

38.554

96.512

0.372
  comE Streptococcus pneumoniae R6

38.554

96.512

0.372
  comE Streptococcus pneumoniae TIGR4

38.554

96.512

0.372

Multiple sequence alignment