Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SSU05_0145 Genome accession   CP000407
Coordinates   132836..133231 (+) Length   131 a.a.
NCBI ID   ABP89115.1    Uniprot ID   -
Organism   Streptococcus suis 05ZYH33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127836..138231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU05_0138 - 127846..128907 (-) 1062 ABP89108.1 Cellulase M and related proteins -
  SSU05_0139 - 129644..130009 (+) 366 ABP89109.1 hypothetical protein -
  SSU05_0140 - 130006..130326 (+) 321 ABP89110.1 Thiol-disulfide isomerase and thioredoxin -
  SSU05_0141 - 130371..131327 (+) 957 ABP89111.1 Predicted secreted protein -
  SSU05_0142 - 131346..131969 (+) 624 ABP89112.1 EMAP domain protein -
  SSU05_0144 - 132002..132781 (-) 780 ABP89114.1 hypothetical protein -
  SSU05_0143 - 132071..132184 (+) 114 ABP89113.1 hypothetical protein -
  SSU05_0145 ssbA 132836..133231 (+) 396 ABP89115.1 Single-stranded DNA-binding protein Machinery gene
  SSU05_0146 - 133350..133595 (-) 246 ABP89116.1 hypothetical protein -
  SSU05_0147 - 133766..134074 (+) 309 ABP89117.1 Co-chaperonin GroES (HSP10) -
  SSU05_0148 - 134085..134945 (+) 861 ABP89118.1 putative chaperonin GroEL -
  SSU05_0149 - 134961..135713 (+) 753 ABP89119.1 GroEL -
  SSU05_0150 - 135939..136352 (+) 414 ABP89120.1 Ribosomal protein S12 -
  SSU05_0151 - 136369..136839 (+) 471 ABP89121.1 Ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14868.73 Da        Isoelectric Point: 5.0026

>NTDB_id=20075 SSU05_0145 ABP89115.1 132836..133231(+) (ssbA) [Streptococcus suis 05ZYH33]
MYNKTILIGRLTAQPELTQTPTGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20075 SSU05_0145 ABP89115.1 132836..133231(+) (ssbA) [Streptococcus suis 05ZYH33]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACACCAACTGGCAAAAATTTGAC
TCGTGTAACTGTCGCAGTCAATCGCCGATTTAAGACAGAAAATGGTGAGCGTGAAGCAGATTTTCTCAATGTTATTTTCT
GGGGCAAACTGGCGGAGACACTTGTTTCTTATGGCAGCAAGGGTAGTCTGATTTCTATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTCTAGGCCAATCTTTCCAATTACTAGAAAGCCGTGCTCA
ACGTGCCATGCGTGAAAATAATACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae Rx1

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae D39

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.992

100

0.71
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.226

80.916

0.374

Multiple sequence alignment