Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SDD27957_00820 Genome accession   CM001076
Coordinates   151238..151633 (+) Length   131 a.a.
NCBI ID   EFY01858.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146238..156633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00785 - 146600..147376 (-) 777 EFY01851.1 pyrroline-5-carboxylate reductase -
  SDD27957_00790 - 147423..148490 (-) 1068 EFY01852.1 Glutamyl aminopeptidase -
  SDD27957_00795 - 148747..148881 (+) 135 EFY01853.1 hypothetical protein -
  SDD27957_00800 - 149049..149333 (+) 285 EFY01854.1 hypothetical protein -
  SDD27957_00805 - 149330..149647 (+) 318 EFY01855.1 putative thioredoxin -
  SDD27957_00810 - 149666..150292 (+) 627 EFY01856.1 putative tRNA-binding protein -
  SDD27957_00815 - 150432..151160 (-) 729 EFY01857.1 S-adenosylmethionine-dependent methyltransferase -
  SDD27957_00820 ssbA 151238..151633 (+) 396 EFY01858.1 single-stranded DNA-binding protein Machinery gene
  SDD27957_00825 - 152143..153105 (+) 963 EFY01859.1 lipoprotein -
  SDD27957_00830 - 153135..154094 (+) 960 EFY01860.1 lipoprotein -
  SDD27957_00835 - 154135..155019 (+) 885 EFY01861.1 transport system permease protein -
  SDD27957_00840 - 155113..156342 (-) 1230 EFY01862.1 transposase IS116/IS110/IS902 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14886.12 Da        Isoelectric Point: 6.9845

>NTDB_id=20016 SDD27957_00820 EFY01858.1 151238..151633(+) (ssbA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MYNKVIMIGRLVAKPELVKTATDKYVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=20016 SDD27957_00820 EFY01858.1 151238..151633(+) (ssbA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGTATAATAAAGTGATTATGATCGGTCGTTTGGTGGCTAAACCAGAATTGGTAAAAACAGCTACCGATAAGTATGTAGC
ACGTCTCTCTTTGGCTGTTAATCGAAGATTTAAAAATGCTTCAGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTAGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGCCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATCTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment