Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   SDD27957_00740 Genome accession   CM001076
Coordinates   141006..141434 (+) Length   142 a.a.
NCBI ID   EFY01842.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 136006..146434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00720 - 138349..138714 (+) 366 EFY01838.1 Putative DNA binding protein -
  SDD27957_00725 comGA 138795..139736 (+) 942 EFY01839.1 putative ABC transporter subunit ComYA Machinery gene
  SDD27957_00730 comGB 139672..140703 (+) 1032 EFY01840.1 putative competence protein Machinery gene
  SDD27957_00735 comGC 140705..141031 (+) 327 EFY01841.1 putative competence protein Machinery gene
  SDD27957_00740 comGD 141006..141434 (+) 429 EFY01842.1 putative competence protein Machinery gene
  SDD27957_00745 comGE 141442..141687 (+) 246 EFY01843.1 hypothetical protein Machinery gene
  SDD27957_00750 comGF 141668..142108 (+) 441 EFY01844.1 comG operon protein 6 Machinery gene
  SDD27957_00755 - 142086..142460 (+) 375 EFY01845.1 hypothetical protein -
  SDD27957_00760 comGH 142523..143476 (+) 954 EFY01846.1 adenine-specific methyltransferase Machinery gene
  SDD27957_00765 - 143535..144731 (+) 1197 EFY01847.1 acetate kinase -
  SDD27957_00770 - 145041..145247 (+) 207 EFY01848.1 DNA-binding protein -
  SDD27957_00775 - 145530..146006 (+) 477 EFY01849.1 CAAX amino terminal protease family membrane protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16453.88 Da        Isoelectric Point: 9.8758

>NTDB_id=20016 SDD27957_00740 EFY01842.1 141006..141434(+) (comGD) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKSPFLNLKAYTLLESLLTLSVTSFIVLGLSVPVTSSYRRVQEQLFFTRFEHFYRHQQKLAILEHDQRVLTISSKQILAA
EEWLTIPESIRVKNSQQLVIDQMGGNHSLAKIIFETTDQRVTYQFYLGSGNYQKTSQSLHRS

Nucleotide


Download         Length: 429 bp        

>NTDB_id=20016 SDD27957_00740 EFY01842.1 141006..141434(+) (comGD) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAAAGTCCATTCTTAAACCTTAAAGCTTATACGCTGCTTGAAAGCTTATTAACGCTATCAGTAACAAGTTTTATTGT
CTTGGGGTTATCTGTGCCTGTGACAAGTAGTTATCGAAGGGTTCAGGAACAGCTTTTTTTCACTCGTTTTGAGCACTTTT
ATCGTCACCAACAAAAGTTGGCTATTTTGGAACATGATCAACGAGTTTTGACAATTTCTTCGAAACAAATACTAGCGGCA
GAGGAGTGGTTAACAATACCTGAGTCGATAAGGGTTAAGAATAGTCAGCAATTGGTTATTGATCAAATGGGAGGAAATCA
TTCTTTAGCAAAGATAATATTCGAGACGACTGATCAACGGGTAACTTATCAATTTTATCTAGGGAGTGGAAATTATCAAA
AAACAAGTCAAAGCTTACATCGCTCTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA140

45.736

90.845

0.415
  comGD Streptococcus mutans UA159

45.736

90.845

0.415
  comGD Streptococcus gordonii str. Challis substr. CH1

44.275

92.254

0.408
  comGD/cglD Streptococcus mitis NCTC 12261

39.098

93.662

0.366

Multiple sequence alignment