Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   SDD27957_00735 Genome accession   CM001076
Coordinates   140705..141031 (+) Length   108 a.a.
NCBI ID   EFY01841.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 135705..146031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDD27957_00720 - 138349..138714 (+) 366 EFY01838.1 Putative DNA binding protein -
  SDD27957_00725 comYA 138795..139736 (+) 942 EFY01839.1 putative ABC transporter subunit ComYA Machinery gene
  SDD27957_00730 comYB 139672..140703 (+) 1032 EFY01840.1 putative competence protein Machinery gene
  SDD27957_00735 comYC 140705..141031 (+) 327 EFY01841.1 putative competence protein Machinery gene
  SDD27957_00740 - 141006..141434 (+) 429 EFY01842.1 putative competence protein -
  SDD27957_00745 - 141442..141687 (+) 246 EFY01843.1 hypothetical protein -
  SDD27957_00750 - 141668..142108 (+) 441 EFY01844.1 comG operon protein 6 -
  SDD27957_00755 - 142086..142460 (+) 375 EFY01845.1 hypothetical protein -
  SDD27957_00760 comYH 142523..143476 (+) 954 EFY01846.1 adenine-specific methyltransferase Machinery gene
  SDD27957_00765 - 143535..144731 (+) 1197 EFY01847.1 acetate kinase -
  SDD27957_00770 - 145041..145247 (+) 207 EFY01848.1 DNA-binding protein -
  SDD27957_00775 - 145530..146006 (+) 477 EFY01849.1 CAAX amino terminal protease family membrane protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12425.47 Da        Isoelectric Point: 9.6248

>NTDB_id=20013 SDD27957_00735 EFY01841.1 140705..141031(+) (comYC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MKNQWKPLRQYQLQAFTLLEMLLVILVISVLMLLFVPNLSKQKDRVTETGNAAVVKLVENQAELYELSQGSKPSLQQLKN
DGSITDKQVKAYTDYYEKHTNEKSILKP

Nucleotide


Download         Length: 327 bp        

>NTDB_id=20013 SDD27957_00735 EFY01841.1 140705..141031(+) (comYC) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGAAAAACCAATGGAAACCATTACGGCAATACCAACTACAAGCTTTCACACTTCTAGAAATGTTGCTGGTGATTTTAGT
CATCAGTGTCTTAATGCTCTTATTTGTACCTAATTTAAGCAAACAAAAAGATAGGGTTACCGAAACAGGAAATGCTGCTG
TTGTCAAATTAGTGGAGAATCAAGCAGAGTTGTATGAATTATCGCAAGGATCAAAACCAAGTTTACAACAGTTGAAGAAC
GATGGCAGTATTACAGATAAACAGGTAAAAGCTTACACAGACTATTACGAAAAGCATACCAATGAAAAGTCCATTCTTAA
ACCTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

57.426

93.519

0.537
  comGC Lactococcus lactis subsp. cremoris KW2

53.846

96.296

0.519
  comGC/cglC Streptococcus mitis SK321

55.556

91.667

0.509
  comGC/cglC Streptococcus mitis NCTC 12261

51.429

97.222

0.5
  comGC/cglC Streptococcus pneumoniae Rx1

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae D39

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae R6

54.545

91.667

0.5
  comGC/cglC Streptococcus pneumoniae TIGR4

54.545

91.667

0.5
  comYC Streptococcus mutans UA159

55.319

87.037

0.481
  comYC Streptococcus mutans UA140

55.319

87.037

0.481
  comYC Streptococcus suis isolate S10

51.136

81.481

0.417

Multiple sequence alignment