Detailed information NTG0020011

Bioinformatically predicted

Overview

• Name: comYA
• Type: Machinery gene
• Locus tag: SDD27957_00725
• Genome accession: CM001076
• Coordinates: 138795..139736 (+)
• Length: 313 a.a.
• NCBI ID: EFY01839.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 133795..144736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDD27957_00715	-	134504..138145 (+)	3642	EFY01837.1	DNA-directed RNA polymerase subunit beta'	-
SDD27957_00720	-	138349..138714 (+)	366	EFY01838.1	Putative DNA binding protein	-
SDD27957_00725	comYA	138795..139736 (+)	942	EFY01839.1	putative ABC transporter subunit ComYA	Machinery gene
SDD27957_00730	comYB	139672..140703 (+)	1032	EFY01840.1	putative competence protein	Machinery gene
SDD27957_00735	comYC	140705..141031 (+)	327	EFY01841.1	putative competence protein	Machinery gene
SDD27957_00740	-	141006..141434 (+)	429	EFY01842.1	putative competence protein	-
SDD27957_00745	-	141442..141687 (+)	246	EFY01843.1	hypothetical protein	-
SDD27957_00750	-	141668..142108 (+)	441	EFY01844.1	comG operon protein 6	-
SDD27957_00755	-	142086..142460 (+)	375	EFY01845.1	hypothetical protein	-
SDD27957_00760	comYH	142523..143476 (+)	954	EFY01846.1	adenine-specific methyltransferase	Machinery gene
SDD27957_00765	-	143535..144731 (+)	1197	EFY01847.1	acetate kinase	-

Sequence

Protein

• Length: 313 a.a.
• Molecular weight: 35181.29 Da
• Isoelectric Point: 7.5609

>NTDB_id=20011 SDD27957_00725 EFY01839.1 138795..139736(+) (comYA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
MVQALAKSILKEAEQVQAQDIYILPKEDQYELLVRVGDERRLVDVYRGDRMAHLISHFKFVAGMTVGEKRRCQVGSCDYD
IGEDTLLSLRLSSVGNYRGQESLVIRLLHHRQRSLHYWFDGLKTVARQIGGRGLYLFAGPVGSGKTTLMHQLIADYYQGA
QVISIEDPVEIKNHQALQLQVNDSIGMTYDNLIKLSLRHRPDILIIGEIRDSQTARAVIRASLTGALVFSTVHAKSISGV
YARLLELGVTRAELDNCLAFVAYQRLLNGGALIDSTQTEFEHYSPNQWNQQIDDLLAAGHLSPKQARIEKIIQ

Nucleotide

• Length: 942 bp

>NTDB_id=20011 SDD27957_00725 EFY01839.1 138795..139736(+) (comYA) [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957]
ATGGTACAAGCATTAGCAAAATCTATTTTGAAAGAAGCTGAGCAGGTTCAAGCTCAAGATATCTATATTTTGCCAAAGGA
AGATCAGTATGAGTTATTGGTAAGGGTAGGAGACGAAAGGAGATTGGTGGATGTTTATCGGGGCGATCGGATGGCTCATC
TTATTAGTCACTTTAAGTTCGTTGCAGGAATGACTGTCGGTGAGAAACGACGCTGTCAAGTCGGTTCTTGTGATTATGAT
ATCGGTGAAGACACACTTTTGTCTCTACGCCTATCTAGTGTTGGAAATTACCGTGGACAAGAGAGTTTAGTGATTCGGTT
ACTGCACCATCGACAAAGAAGTTTACACTACTGGTTTGACGGACTGAAAACAGTCGCACGTCAGATTGGAGGCCGAGGGC
TCTATCTTTTTGCAGGTCCAGTCGGATCAGGGAAAACAACTTTGATGCACCAATTGATTGCTGATTATTATCAGGGAGCA
CAGGTCATTAGCATAGAGGATCCGGTGGAAATCAAAAATCATCAAGCGCTCCAATTACAAGTTAATGATAGTATTGGCAT
GACTTACGACAACTTGATCAAACTATCTTTACGGCATCGCCCTGATATTTTAATCATTGGTGAAATTCGAGACAGCCAGA
CAGCTAGAGCGGTTATTAGAGCAAGTTTAACAGGTGCCTTAGTATTTTCAACAGTGCATGCCAAAAGCATTTCTGGTGTT
TATGCCAGATTACTAGAACTAGGAGTGACAAGAGCAGAATTAGACAATTGTTTGGCTTTTGTTGCTTACCAACGATTGCT
TAATGGAGGGGCATTAATTGACTCAACTCAAACAGAATTTGAACACTACTCACCAAACCAATGGAATCAACAAATTGATG
ACCTTCTTGCAGCGGGACATCTCAGTCCGAAGCAAGCAAGGATCGAAAAAATTATCCAGTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (9-267)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYA	Streptococcus mutans UA140	62.058	99.361	0.617
comYA	Streptococcus mutans UA159	62.058	99.361	0.617
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	61.935	99.042	0.613
comYA	Streptococcus gordonii str. Challis substr. CH1	61.415	99.361	0.61
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	60.772	99.361	0.604
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	60.45	99.361	0.601
comGA/cglA/cilD	Streptococcus pneumoniae D39	60.45	99.361	0.601
comGA/cglA/cilD	Streptococcus pneumoniae R6	60.45	99.361	0.601
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	60.45	99.361	0.601
comGA	Lactococcus lactis subsp. cremoris KW2	50.804	99.361	0.505