Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BI380_RS27675 Genome accession   NZ_CP017420
Coordinates   6060168..6061385 (-) Length   405 a.a.
NCBI ID   WP_016445610.1    Uniprot ID   A0AAJ1HZR1
Organism   Delftia tsuruhatensis strain CM13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6055168..6066385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BI380_RS27645 (BI380_27645) - 6055999..6056955 (+) 957 WP_046238482.1 ATP-binding protein -
  BI380_RS27650 (BI380_27650) - 6057006..6057512 (+) 507 WP_016445605.1 (deoxy)nucleoside triphosphate pyrophosphohydrolase -
  BI380_RS27655 (BI380_27655) - 6057523..6057777 (-) 255 WP_016451023.1 DNA gyrase inhibitor YacG -
  BI380_RS27660 (BI380_27660) zapD 6057777..6058532 (-) 756 WP_026062416.1 cell division protein ZapD -
  BI380_RS27665 (BI380_27665) coaE 6058622..6059260 (-) 639 WP_016445608.1 dephospho-CoA kinase -
  BI380_RS27670 (BI380_27670) pilD 6059275..6060168 (-) 894 WP_016445609.1 prepilin peptidase Machinery gene
  BI380_RS27675 (BI380_27675) pilC 6060168..6061385 (-) 1218 WP_016445610.1 type II secretion system F family protein Machinery gene
  BI380_RS27680 (BI380_27680) pilB 6061424..6063166 (-) 1743 WP_034364744.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BI380_RS27690 (BI380_27690) - 6063403..6064332 (-) 930 WP_046238483.1 polyprenyl synthetase family protein -
  BI380_RS27695 (BI380_27695) rplU 6064563..6064874 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  BI380_RS27700 (BI380_27700) rpmA 6064890..6065147 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44446.30 Da        Isoelectric Point: 9.3922

>NTDB_id=198018 BI380_RS27675 WP_016445610.1 6060168..6061385(-) (pilC) [Delftia tsuruhatensis strain CM13]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=198018 BI380_RS27675 WP_016445610.1 6060168..6061385(-) (pilC) [Delftia tsuruhatensis strain CM13]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATCGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAAGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAAAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAGGAAGTGTTCACCTCGTTCGGCGCCGACCTGCCGGCACCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTCGAGGCACTAG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCCATGACCAATGCCAATGTCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCTATCGACCATATGCTGGGCAAGGCGGCCGATTTCTATGAAGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGTC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTACCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.295

98.025

0.385
  pilC Thermus thermophilus HB27

37.5

98.765

0.37

Multiple sequence alignment