Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | BI380_RS27670 | Genome accession | NZ_CP017420 |
| Coordinates | 6059275..6060168 (-) | Length | 297 a.a. |
| NCBI ID | WP_016445609.1 | Uniprot ID | A0A1H3L211 |
| Organism | Delftia tsuruhatensis strain CM13 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 6054275..6065168
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI380_RS27640 (BI380_27640) | argJ | 6054601..6055833 (+) | 1233 | WP_017405522.1 | bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ | - |
| BI380_RS27645 (BI380_27645) | - | 6055999..6056955 (+) | 957 | WP_046238482.1 | ATP-binding protein | - |
| BI380_RS27650 (BI380_27650) | - | 6057006..6057512 (+) | 507 | WP_016445605.1 | (deoxy)nucleoside triphosphate pyrophosphohydrolase | - |
| BI380_RS27655 (BI380_27655) | - | 6057523..6057777 (-) | 255 | WP_016451023.1 | DNA gyrase inhibitor YacG | - |
| BI380_RS27660 (BI380_27660) | zapD | 6057777..6058532 (-) | 756 | WP_026062416.1 | cell division protein ZapD | - |
| BI380_RS27665 (BI380_27665) | coaE | 6058622..6059260 (-) | 639 | WP_016445608.1 | dephospho-CoA kinase | - |
| BI380_RS27670 (BI380_27670) | pilD | 6059275..6060168 (-) | 894 | WP_016445609.1 | prepilin peptidase | Machinery gene |
| BI380_RS27675 (BI380_27675) | pilC | 6060168..6061385 (-) | 1218 | WP_016445610.1 | type II secretion system F family protein | Machinery gene |
| BI380_RS27680 (BI380_27680) | pilB | 6061424..6063166 (-) | 1743 | WP_034364744.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BI380_RS27690 (BI380_27690) | - | 6063403..6064332 (-) | 930 | WP_046238483.1 | polyprenyl synthetase family protein | - |
| BI380_RS27695 (BI380_27695) | rplU | 6064563..6064874 (+) | 312 | WP_012207284.1 | 50S ribosomal protein L21 | - |
| BI380_RS27700 (BI380_27700) | rpmA | 6064890..6065147 (+) | 258 | WP_012207283.1 | 50S ribosomal protein L27 | - |
Sequence
Protein
Download Length: 297 a.a. Molecular weight: 31842.37 Da Isoelectric Point: 6.9135
>NTDB_id=198017 BI380_RS27670 WP_016445609.1 6059275..6060168(-) (pilD) [Delftia tsuruhatensis strain CM13]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL
Nucleotide
Download Length: 894 bp
>NTDB_id=198017 BI380_RS27670 WP_016445609.1 6059275..6060168(-) (pilD) [Delftia tsuruhatensis strain CM13]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAAGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAAGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
51.59 |
95.286 |
0.492 |
| pilD | Vibrio campbellii strain DS40M4 |
46.416 |
98.653 |
0.458 |
| pilD | Acinetobacter nosocomialis M2 |
44.364 |
92.593 |
0.411 |
| pilD | Neisseria gonorrhoeae MS11 |
45.865 |
89.562 |
0.411 |
| pilD | Acinetobacter baumannii D1279779 |
44 |
92.593 |
0.407 |