Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | BI364_RS14445 | Genome accession | NZ_CP017415 |
| Coordinates | 2988543..2989763 (+) | Length | 406 a.a. |
| NCBI ID | WP_070079346.1 | Uniprot ID | A0A1D8IRG5 |
| Organism | Acidihalobacter yilgarnensis strain F5 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2983543..2994763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BI364_RS14430 (BI364_14430) | - | 2984175..2985263 (-) | 1089 | WP_070079343.1 | glycosyltransferase family 1 protein | - |
| BI364_RS14435 (BI364_14435) | - | 2985331..2986638 (-) | 1308 | WP_070079344.1 | oligosaccharide flippase family protein | - |
| BI364_RS14440 (BI364_14440) | pilB | 2986779..2988506 (+) | 1728 | WP_070079345.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| BI364_RS14445 (BI364_14445) | pilC | 2988543..2989763 (+) | 1221 | WP_070079346.1 | type II secretion system F family protein | Machinery gene |
| BI364_RS14450 (BI364_14450) | pilD | 2989832..2990722 (+) | 891 | WP_070079347.1 | A24 family peptidase | Machinery gene |
| BI364_RS14455 (BI364_14455) | coaE | 2990719..2991330 (+) | 612 | WP_070079348.1 | dephospho-CoA kinase | - |
| BI364_RS14460 (BI364_14460) | - | 2991344..2991559 (-) | 216 | WP_156782781.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44398.23 Da Isoelectric Point: 10.0022
>NTDB_id=197998 BI364_RS14445 WP_070079346.1 2988543..2989763(+) (pilC) [Acidihalobacter yilgarnensis strain F5]
MAQKALSKSIFVWEGVDRKGIRIKGENEAQSEALLKSQLRRDGINPTKIRKKAKSLFGGGKKIDGKDIAVLARQLATMMS
AGVPLVQSLDIIAQGHDKPAMQKMVFGLKGNVEGGNTLADALTHYPDLFDDLFVNLVRAGEQSGSLENLLDKIATYKEKT
EAIKAKIKKAMMYPAAVVTVAFIVTAILLIFVVPQFQTLFNGFGASLPAFTLFVIHLSKLFQAWWWAIFAAIGGGIWLFA
RAYKRSHAFHRMIDGWMLHVPIFGALARKSAIARFARTLSTMFAAGVPLVEALESVAGATGNVHYAEATMKMRDDTSSGT
QLRQSMRQFTHLFPNMSLQMVAIGEESGALDNMLAKVADFYEEEVDVMVDGLSTLLEPLIMVILGVIVGGLVIAMYLPIF
NLGKVV
MAQKALSKSIFVWEGVDRKGIRIKGENEAQSEALLKSQLRRDGINPTKIRKKAKSLFGGGKKIDGKDIAVLARQLATMMS
AGVPLVQSLDIIAQGHDKPAMQKMVFGLKGNVEGGNTLADALTHYPDLFDDLFVNLVRAGEQSGSLENLLDKIATYKEKT
EAIKAKIKKAMMYPAAVVTVAFIVTAILLIFVVPQFQTLFNGFGASLPAFTLFVIHLSKLFQAWWWAIFAAIGGGIWLFA
RAYKRSHAFHRMIDGWMLHVPIFGALARKSAIARFARTLSTMFAAGVPLVEALESVAGATGNVHYAEATMKMRDDTSSGT
QLRQSMRQFTHLFPNMSLQMVAIGEESGALDNMLAKVADFYEEEVDVMVDGLSTLLEPLIMVILGVIVGGLVIAMYLPIF
NLGKVV
Nucleotide
Download Length: 1221 bp
>NTDB_id=197998 BI364_RS14445 WP_070079346.1 2988543..2989763(+) (pilC) [Acidihalobacter yilgarnensis strain F5]
ATGGCACAAAAGGCACTGAGCAAATCCATCTTCGTCTGGGAAGGCGTTGACCGAAAAGGCATCCGCATCAAGGGCGAAAA
CGAAGCTCAGAGCGAGGCCTTGCTCAAGTCGCAACTCAGGCGGGACGGCATCAATCCGACCAAAATCCGGAAAAAAGCGA
AATCGTTGTTCGGTGGGGGCAAAAAGATCGACGGCAAGGACATCGCCGTGCTCGCGCGCCAGCTCGCCACCATGATGAGT
GCCGGCGTACCGCTGGTTCAGTCACTGGACATCATCGCGCAAGGGCACGACAAACCCGCCATGCAGAAAATGGTCTTCGG
GCTCAAGGGTAACGTCGAGGGCGGTAACACACTCGCAGATGCCCTGACCCATTATCCAGACCTGTTCGACGACTTGTTCG
TCAATCTCGTCCGCGCCGGTGAGCAATCCGGTTCCCTGGAAAATCTTCTAGATAAAATTGCCACCTACAAGGAAAAAACC
GAAGCGATCAAGGCCAAGATCAAGAAGGCGATGATGTATCCGGCCGCGGTCGTCACGGTCGCCTTCATTGTCACAGCCAT
CCTCCTCATCTTCGTGGTCCCTCAGTTCCAGACGCTGTTCAATGGTTTTGGCGCCTCCCTACCCGCCTTTACACTCTTCG
TAATCCACTTGTCCAAGCTCTTTCAAGCATGGTGGTGGGCGATTTTCGCCGCTATCGGCGGTGGTATCTGGTTGTTCGCG
CGTGCCTACAAACGCTCGCACGCATTTCATCGCATGATCGACGGCTGGATGCTACACGTGCCGATTTTCGGCGCGCTTGC
CAGGAAATCGGCCATCGCTCGCTTTGCGCGGACGCTGTCCACCATGTTCGCAGCCGGCGTGCCGCTGGTCGAAGCGCTCG
AATCGGTAGCGGGCGCGACCGGCAACGTGCATTACGCCGAGGCCACGATGAAAATGCGCGACGATACTTCCTCCGGCACC
CAGTTGCGTCAATCGATGCGCCAGTTCACGCATTTGTTCCCCAACATGAGCCTGCAGATGGTAGCCATCGGCGAGGAATC
GGGAGCACTGGATAATATGCTCGCCAAGGTCGCCGACTTCTACGAAGAGGAGGTCGACGTCATGGTCGACGGTCTCTCCA
CTCTCCTCGAACCGCTGATCATGGTCATACTCGGCGTCATCGTCGGCGGACTGGTTATCGCCATGTACCTGCCAATCTTC
AATCTCGGCAAGGTCGTCTGA
ATGGCACAAAAGGCACTGAGCAAATCCATCTTCGTCTGGGAAGGCGTTGACCGAAAAGGCATCCGCATCAAGGGCGAAAA
CGAAGCTCAGAGCGAGGCCTTGCTCAAGTCGCAACTCAGGCGGGACGGCATCAATCCGACCAAAATCCGGAAAAAAGCGA
AATCGTTGTTCGGTGGGGGCAAAAAGATCGACGGCAAGGACATCGCCGTGCTCGCGCGCCAGCTCGCCACCATGATGAGT
GCCGGCGTACCGCTGGTTCAGTCACTGGACATCATCGCGCAAGGGCACGACAAACCCGCCATGCAGAAAATGGTCTTCGG
GCTCAAGGGTAACGTCGAGGGCGGTAACACACTCGCAGATGCCCTGACCCATTATCCAGACCTGTTCGACGACTTGTTCG
TCAATCTCGTCCGCGCCGGTGAGCAATCCGGTTCCCTGGAAAATCTTCTAGATAAAATTGCCACCTACAAGGAAAAAACC
GAAGCGATCAAGGCCAAGATCAAGAAGGCGATGATGTATCCGGCCGCGGTCGTCACGGTCGCCTTCATTGTCACAGCCAT
CCTCCTCATCTTCGTGGTCCCTCAGTTCCAGACGCTGTTCAATGGTTTTGGCGCCTCCCTACCCGCCTTTACACTCTTCG
TAATCCACTTGTCCAAGCTCTTTCAAGCATGGTGGTGGGCGATTTTCGCCGCTATCGGCGGTGGTATCTGGTTGTTCGCG
CGTGCCTACAAACGCTCGCACGCATTTCATCGCATGATCGACGGCTGGATGCTACACGTGCCGATTTTCGGCGCGCTTGC
CAGGAAATCGGCCATCGCTCGCTTTGCGCGGACGCTGTCCACCATGTTCGCAGCCGGCGTGCCGCTGGTCGAAGCGCTCG
AATCGGTAGCGGGCGCGACCGGCAACGTGCATTACGCCGAGGCCACGATGAAAATGCGCGACGATACTTCCTCCGGCACC
CAGTTGCGTCAATCGATGCGCCAGTTCACGCATTTGTTCCCCAACATGAGCCTGCAGATGGTAGCCATCGGCGAGGAATC
GGGAGCACTGGATAATATGCTCGCCAAGGTCGCCGACTTCTACGAAGAGGAGGTCGACGTCATGGTCGACGGTCTCTCCA
CTCTCCTCGAACCGCTGATCATGGTCATACTCGGCGTCATCGTCGGCGGACTGGTTATCGCCATGTACCTGCCAATCTTC
AATCTCGGCAAGGTCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
63.054 |
100 |
0.631 |
| pilC | Acinetobacter baumannii D1279779 |
56.65 |
100 |
0.567 |
| pilC | Acinetobacter baylyi ADP1 |
55.774 |
100 |
0.559 |
| pilC | Legionella pneumophila strain ERS1305867 |
55.919 |
97.783 |
0.547 |
| pilG | Neisseria meningitidis 44/76-A |
45.592 |
97.783 |
0.446 |
| pilG | Neisseria gonorrhoeae MS11 |
45.592 |
97.783 |
0.446 |
| pilC | Vibrio cholerae strain A1552 |
42.543 |
100 |
0.429 |
| pilC | Vibrio campbellii strain DS40M4 |
42.289 |
99.015 |
0.419 |
| pilC | Thermus thermophilus HB27 |
37.343 |
98.276 |
0.367 |