Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   WH25_RS09275 Genome accession   NZ_CP017295
Coordinates   1932151..1934133 (-) Length   660 a.a.
NCBI ID   WP_046164591.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1927151..1939133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09255 (WH25_09255) amiF 1927654..1928577 (-) 924 WP_046164588.1 ATP-binding cassette domain-containing protein Regulator
  WH25_RS09260 (WH25_09260) amiE 1928588..1929655 (-) 1068 WP_046164589.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09265 (WH25_09265) amiD 1929664..1930590 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  WH25_RS09270 (WH25_09270) amiC 1930590..1932086 (-) 1497 WP_046164590.1 ABC transporter permease Regulator
  WH25_RS09275 (WH25_09275) amiA 1932151..1934133 (-) 1983 WP_046164591.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09280 (WH25_09280) amiA 1934412..1936394 (-) 1983 WP_046164592.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09285 (WH25_09285) amiA3 1936644..1938602 (-) 1959 WP_046164593.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 72977.43 Da        Isoelectric Point: 5.0825

>NTDB_id=197435 WH25_RS09275 WP_046164591.1 1932151..1934133(-) (amiA) [Streptococcus gordonii strain IE35]
MKKGKILALAGVALLATGVLAACSNSTSNSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNYGNL
VPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTKDFS
SVGVKAVDDHTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIEFAKNPN
YWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSFLVGVNIDRQAYNH
TAKSSDAQKSSTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYGDEW
KDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTASAKVQRVQSLKQSIESSLGTDNVVVDIHQMKT
DDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAAAEK
TDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQEKW
NKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=197435 WH25_RS09275 WP_046164591.1 1932151..1934133(-) (amiA) [Streptococcus gordonii strain IE35]
ATGAAGAAAGGTAAAATCCTTGCACTTGCGGGAGTTGCTCTCTTAGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGAATTATTTGA
TCTCTAGTAAAGCAGCAACAACTGACCTTACGGCTAACTTGATCGATGGTCTTTTGGAAAATGACAACTATGGAAACTTG
GTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACTTCGTAAGGATGCTAAATG
GTATACTTCTGATGGTGAAGAATATGCTGATGTCAAAGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTGCTGACAACA
AGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAGGATTTCTCA
TCAGTTGGTGTTAAAGCAGTTGATGACCACACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTCTGGAACTCTAAAAC
AACAATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGCGACAAGTTTGCTCAAGCTGCTGACCCAA
CTAGTCTTCTATACAACGGGCCATTCCTACTCAAATCTATCACATCTAAATCATCTATCGAATTTGCTAAAAATCCAAAT
TATTGGGATAAAGATAATGTCCATGTGAGTGATGTTAAATTAACATACTTTGATGGGCAAGATCAAGGTAAACCAGCTGA
GCAATTTGCTAAAGGTGCTCTAAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCTAAAGTAGAAAAAGAATTCA
AAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTTTTTAGTTGGGGTGAACATTGATCGTCAAGCGTACAATCAC
ACAGCTAAGTCAAGTGATGCACAAAAATCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGCCTTGAGCTT
TGCATTCGACAGAACGGCTTATGCTTCACAAGTTAATGGTAAAGAAGGAGCTACGAAAATGCTCCGCAATCTCTACATTC
CACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGCGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGAGATGAGTGG
AAAGATGTAAACTTCGACGATGCTCAAGATGGCCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAAAGCTAAAAA
AGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTAGTGCTAAAGTTCAGC
GCGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAAATGAAGACT
GATGATGTTTTGAACATCACATATTATGCTGCTTCGGCTGCTGAAGAAGACTGGGATATTTCTGACAATGTTGGTTGGTC
TCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGTGGTGAAAATACCAAAACATTCTTAGGCTTTG
ATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTGCCGCTGAAAAG
ACAGATGTAAATAAACGCTATGAAAAATATGCAGCTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGATACCAACAAC
AAGTAGGACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTAAAGGTCGTG
ACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAAGAAAAATGG
AATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(80-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.725

100

0.609
  amiA3 Streptococcus thermophilus LMD-9

59.97

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.517

100

0.597

Multiple sequence alignment