Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   WH25_RS09265 Genome accession   NZ_CP017295
Coordinates   1929664..1930590 (-) Length   308 a.a.
NCBI ID   WP_008809623.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924664..1935590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09240 (WH25_09240) - 1925667..1927037 (+) 1371 WP_046165202.1 aspartate kinase -
  WH25_RS09255 (WH25_09255) amiF 1927654..1928577 (-) 924 WP_046164588.1 ATP-binding cassette domain-containing protein Regulator
  WH25_RS09260 (WH25_09260) amiE 1928588..1929655 (-) 1068 WP_046164589.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09265 (WH25_09265) amiD 1929664..1930590 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  WH25_RS09270 (WH25_09270) amiC 1930590..1932086 (-) 1497 WP_046164590.1 ABC transporter permease Regulator
  WH25_RS09275 (WH25_09275) amiA 1932151..1934133 (-) 1983 WP_046164591.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34645.61 Da        Isoelectric Point: 9.7223

>NTDB_id=197433 WH25_RS09265 WP_008809623.1 1929664..1930590(-) (amiD) [Streptococcus gordonii strain IE35]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIIMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=197433 WH25_RS09265 WP_008809623.1 1929664..1930590(-) (amiD) [Streptococcus gordonii strain IE35]
ATGGCTTCTATTGATAAAAATAAGTTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCCTA
TTCATACTGGAGATCTGTTATTCGTCAATTTCTGAAAAAGAAATCTACTATTATCATGTTGGCAATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCGATGTTGTCTGACTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTATGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATCAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCCAAATCAGTTGACCGTGTTATGATGGAAGTTTATAACGTTATCTCAAATATTCCGCAATTGTTGATCGTTATTGTT
TTGACTTATTCAATCGGGGCCGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTATCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAACTGGTATCTGTTATCATGACAACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTAACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACCAATGCTTACCTTTTCTGGATTCCGTTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTGGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.143

100

0.821
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment