Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   WH25_RS09270 Genome accession   NZ_CP017295
Coordinates   1930590..1932086 (-) Length   498 a.a.
NCBI ID   WP_046164590.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1925590..1937086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09240 (WH25_09240) - 1925667..1927037 (+) 1371 WP_046165202.1 aspartate kinase -
  WH25_RS09255 (WH25_09255) amiF 1927654..1928577 (-) 924 WP_046164588.1 ATP-binding cassette domain-containing protein Regulator
  WH25_RS09260 (WH25_09260) amiE 1928588..1929655 (-) 1068 WP_046164589.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09265 (WH25_09265) amiD 1929664..1930590 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  WH25_RS09270 (WH25_09270) amiC 1930590..1932086 (-) 1497 WP_046164590.1 ABC transporter permease Regulator
  WH25_RS09275 (WH25_09275) amiA 1932151..1934133 (-) 1983 WP_046164591.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09280 (WH25_09280) amiA 1934412..1936394 (-) 1983 WP_046164592.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55606.65 Da        Isoelectric Point: 9.9541

>NTDB_id=197434 WH25_RS09270 WP_046164590.1 1930590..1932086(-) (amiC) [Streptococcus gordonii strain IE35]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPKGKKISSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=197434 WH25_RS09270 WP_046164590.1 1930590..1932086(-) (amiC) [Streptococcus gordonii strain IE35]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGACCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CTAATTACGAAAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACGGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAGTTTTATGCTGTTCGTGAGGTGCCAGTTCTGGAACGTGTTCTTG
GCTTCTATGGGAATTTAATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACGAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTTCCGTTTGTTCATCAAAATTTTGTGACCTTGAACCTAGGAAATTCTTACCCAACTTATGCAAATATCCCTGTGT
TACAGGTTATTTCACAAGGGCAAGGACAAACTAAATCATCTGAGGTTCAATTCCCTAAAGGTAAGAAAATTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGATGATCCGTA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCAATTATTGGTCTGATTGGTATTGCAATCT
CTTATCTGATTGCTGTCCCATTAGGATCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACAGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCATATGTTCTTCCGGCAGTAATTCTGGGACTTTTGGGTGCGCCAA
GCACAGCTATCTGGATTCGTCGCTATATGATTGACTTGCAATCCCAAGACTTTGTACGTTTTGCTCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTCAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGGGCTGTTAT
TGGAGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCCTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAACTCTATGGTAGTCGGATTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

78.916

100

0.789
  amiC Streptococcus thermophilus LMG 18311

78.514

100

0.785
  amiC Streptococcus thermophilus LMD-9

78.313

100

0.783

Multiple sequence alignment