Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   WH25_RS09280 Genome accession   NZ_CP017295
Coordinates   1934412..1936394 (-) Length   660 a.a.
NCBI ID   WP_046164592.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1929412..1941394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09265 (WH25_09265) amiD 1929664..1930590 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  WH25_RS09270 (WH25_09270) amiC 1930590..1932086 (-) 1497 WP_046164590.1 ABC transporter permease Regulator
  WH25_RS09275 (WH25_09275) amiA 1932151..1934133 (-) 1983 WP_046164591.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09280 (WH25_09280) amiA 1934412..1936394 (-) 1983 WP_046164592.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09285 (WH25_09285) amiA3 1936644..1938602 (-) 1959 WP_046164593.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09290 (WH25_09290) amiA 1938817..1940778 (-) 1962 WP_046164594.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73594.03 Da        Isoelectric Point: 5.0817

>NTDB_id=197436 WH25_RS09280 WP_046164592.1 1934412..1936394(-) (amiA) [Streptococcus gordonii strain IE35]
MKKRNVLAMAGVTLLAVGVLAACSSSKSGSSNTNTNFTYVYQTDPETLDYTLSNKTSTHEITSNVIDGLLENDQYGNLVP
SLAEDWSVSKDGLTYTYKLRKGVKWYTSDGEEYADVTAKDFVTGLKHAVDKKSEALYMVENSIKGLDAYIKGETKDFSTV
GIKAVDDHTLQFTLEHPESFWNSKLTMGVLFPVNEEFLKSKGDKFGQATDPTSILYNGPFLLKSITSKSSIEFAKNQNYW
DKDNVHVDNVKLAFYDGQDQESLIRGFKDGSYSKARVYPRSSNYASVEKEYKDNIIFSPQGSSTFTVFTNIDRQSYNHTS
KTTDAQKTSTKKAILNKDFRQALNFAYDRKAYSDQVNGEEGALKSVRNLYIPPTFVQVGDKNFGDVVKEDVVKYGDEWKD
VDFSDATNGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPTIQTNTLIVKRAQSLKQSIEKSLGTDNVVVDIQMLSQED
VQNITYYAPNAAALDWDITDQLGWTPDFQDPSSYLEILHPETGDNTKSFLGFEAGSGNAAAKQIGMDEFGKLLDEAAAEK
TDTTKRYEKYAAAQAWLTDSSILIPSTSNGGGAGVTRVVPFTAAFGWTGNKSDGAFLYKYIKLQDKPVTKKEYQEAEKKW
IKEKEESNKKAQEELEKHIK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=197436 WH25_RS09280 WP_046164592.1 1934412..1936394(-) (amiA) [Streptococcus gordonii strain IE35]
ATGAAGAAACGTAATGTTTTAGCTATGGCTGGTGTTACTTTACTTGCTGTTGGTGTCTTAGCTGCCTGCTCTAGTTCTAA
GTCTGGATCATCAAACACAAATACTAATTTTACTTATGTTTATCAAACAGACCCAGAAACTTTGGACTATACCTTATCAA
ATAAGACCTCTACCCATGAAATCACATCTAATGTCATTGATGGTTTGCTTGAAAATGACCAATATGGTAATCTTGTTCCA
TCACTTGCAGAAGACTGGAGTGTATCTAAGGACGGCCTGACTTACACTTACAAATTGCGTAAGGGAGTTAAATGGTATAC
ATCCGATGGCGAAGAATATGCAGATGTAACTGCTAAGGATTTTGTGACAGGTTTGAAACATGCTGTAGATAAAAAATCAG
AAGCTCTTTATATGGTGGAAAATTCCATCAAAGGATTGGATGCCTATATCAAAGGGGAAACAAAGGACTTCTCTACAGTA
GGGATTAAAGCTGTCGATGATCATACTTTACAGTTTACTTTGGAACACCCAGAAAGCTTCTGGAATTCTAAATTAACAAT
GGGTGTTCTATTCCCTGTTAATGAAGAGTTCTTGAAATCTAAAGGTGACAAATTCGGTCAAGCTACTGATCCGACAAGTA
TCCTTTATAATGGTCCATTCTTGTTGAAAAGTATAACTTCGAAGTCCTCTATCGAGTTTGCGAAAAATCAGAACTATTGG
GATAAGGACAATGTCCATGTAGACAATGTCAAATTAGCTTTCTATGATGGACAAGACCAAGAATCTCTAATTCGTGGCTT
TAAAGATGGCTCTTATAGTAAGGCGCGTGTTTATCCTCGTAGTTCAAACTATGCATCTGTAGAGAAAGAGTATAAAGACA
ATATTATCTTTAGTCCTCAGGGTTCATCTACTTTCACTGTTTTCACAAACATTGATCGCCAAAGTTACAACCATACCTCT
AAAACGACAGATGCACAAAAAACATCTACCAAAAAAGCTATCTTAAACAAAGATTTCCGTCAAGCTTTGAACTTTGCTTA
TGACCGCAAGGCCTATTCTGACCAAGTGAATGGTGAAGAAGGAGCTCTTAAATCTGTTCGTAATCTCTATATTCCACCAA
CATTTGTCCAAGTTGGTGATAAGAATTTCGGAGATGTCGTAAAAGAAGATGTTGTCAAATACGGCGATGAGTGGAAAGAT
GTTGATTTCTCAGATGCGACTAACGGTCTCTACAATCCAGAGAAAGCCAAAGCGGAATTTGCCAAAGCAAAAGAAGCCCT
TCAAGCAGAAGGCGTGGAATTCCCAATTCATCTGGACATACCAACAATCCAGACCAATACTCTTATTGTAAAACGGGCTC
AATCTTTGAAACAGTCTATTGAAAAGAGTTTAGGAACAGACAATGTTGTGGTTGATATTCAAATGTTATCCCAAGAAGAT
GTTCAGAACATCACTTACTACGCTCCAAATGCAGCTGCTTTGGATTGGGATATCACAGACCAACTTGGCTGGACTCCTGA
CTTCCAAGATCCGTCATCCTACTTAGAGATTCTACACCCAGAAACAGGTGATAATACTAAGTCTTTCCTTGGATTTGAAG
CTGGTAGTGGAAATGCTGCTGCTAAACAAATCGGCATGGATGAATTTGGAAAATTGTTGGATGAAGCTGCTGCTGAAAAG
ACAGATACAACAAAACGCTATGAAAAATATGCAGCTGCTCAAGCTTGGTTGACAGATAGTTCGATCTTGATTCCAAGCAC
TTCAAATGGTGGAGGAGCTGGTGTAACTAGGGTTGTGCCATTCACTGCTGCTTTTGGTTGGACAGGTAACAAATCAGATG
GTGCCTTCCTCTACAAATACATCAAGCTTCAAGATAAACCAGTAACGAAGAAAGAGTATCAAGAAGCTGAGAAGAAATGG
ATTAAAGAAAAAGAAGAATCTAACAAAAAAGCTCAAGAAGAACTTGAGAAGCATATAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

61.271

100

0.614
  amiA3 Streptococcus thermophilus LMD-9

60.363

100

0.605
  amiA3 Streptococcus thermophilus LMG 18311

60.212

100

0.603

Multiple sequence alignment