Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   WH25_RS09285 Genome accession   NZ_CP017295
Coordinates   1936644..1938602 (-) Length   652 a.a.
NCBI ID   WP_046164593.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931644..1943602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09275 (WH25_09275) amiA 1932151..1934133 (-) 1983 WP_046164591.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09280 (WH25_09280) amiA 1934412..1936394 (-) 1983 WP_046164592.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09285 (WH25_09285) amiA3 1936644..1938602 (-) 1959 WP_046164593.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09290 (WH25_09290) amiA 1938817..1940778 (-) 1962 WP_046164594.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09295 (WH25_09295) pbp3 1941070..1942308 (+) 1239 WP_046164595.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72284.06 Da        Isoelectric Point: 5.0945

>NTDB_id=197437 WH25_RS09285 WP_046164593.1 1936644..1938602(-) (amiA3) [Streptococcus gordonii strain IE35]
MNKKKRFVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKGAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGNSFGSAKPSSILYNGPYILKSLTAKSSIEYKKNEKYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMVLRNLAVPPTFVQIRDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKTEFAKAKEALQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQEDVLSSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=197437 WH25_RS09285 WP_046164593.1 1936644..1938602(-) (amiA3) [Streptococcus gordonii strain IE35]
ATGAATAAGAAAAAAAGATTCGTTGGAGTTGGACTTGCGGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
TTCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAACTTGATTCCGTCTCTTGCCGAA
GATTGGACCGTATCTAAGGATGGTTTGACCTATACTTACAAGCTTCGTAAAGGTGCTAAGTGGTATACTTCAGATGGAGA
AGAGTATGCTGAGGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCTGATGGCAAATCTGAAGCTCTTTATC
TTGTCCAAAATTCTATCAAAGGACTGGATGCTTATATCAAAGGAGAAACTAAAGACTTTTCAACTGTAGGTGTAAAAGCG
CTGGATGATTATACAGTGCAGTATACTTTGAATAAACCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATTTTATT
CCCGATAAATGCGGATTTCTTAGCTTCCCAAGGAAATAGTTTTGGCTCAGCTAAACCGTCTAGTATTTTATACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAATCTTCTATTGAATATAAGAAAAACGAAAAATATTGGGATAAAGAAAATGTT
CCCATTGAGGATGTAAAACTATCTTATTACGATGGATCCGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCTTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCAAACTATGCCTCTGTTAAAAAGAAATATGCGGATAATATTACCTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCCTATAACCATACTTCTAAGAAAGATGACAAG
CAAAAATCAGATACTAAGGCTGCTATTTTAAACAAAGACTTCCGTCAGGCAATCGGTTTTGCCTTTGACAGAAAAGCTTA
CGCAGCTCAAACAAATGGCGAAGACGGAGCATCAATGGTCTTGCGTAATCTTGCAGTACCACCGACATTCGTGCAGATTA
GGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGTCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCTCAAGACGGTCTATATAATGCTGAAAAAGCTAAAACAGAGTTTGCAAAAGCTAAAGAAGCACTGCAGGCTCAAGGTGT
GAATTTCCCAATTCATCTAGATTTGCCAGTGAGTCAGTCTGATAAGGCTGGAATTCAACAAGCTAGTTCCTTTAAGCAGT
CTGTTGAGTCAGCTCTAGGAAAAGATAATGTAGTAGTTGATCTTCAGCAAATGTCCGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
GTATTTAGATGTTTTTGATCCTACAAATGGTGGATTGCTACAAGCGATTGGAATTGAACCAGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
AGTTCAAAAATCAGTTCCATTTACTAGAGCTTACTCTTGGATTGGAAGCAAGGGGACTGCTACAAATTATAAATACATGC
AACTTCAAGAGGATGTTTTGTCATCTAAGGATTATGAGAAGGCATTTAAAACCTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.904

100

0.594
  amiA3 Streptococcus thermophilus LMG 18311

58.6

100

0.59
  amiA Streptococcus salivarius strain HSISS4

58.689

100

0.59

Multiple sequence alignment