Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   WH25_RS09290 Genome accession   NZ_CP017295
Coordinates   1938817..1940778 (-) Length   653 a.a.
NCBI ID   WP_046164594.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1933817..1945778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09280 (WH25_09280) amiA 1934412..1936394 (-) 1983 WP_046164592.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09285 (WH25_09285) amiA3 1936644..1938602 (-) 1959 WP_046164593.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09290 (WH25_09290) amiA 1938817..1940778 (-) 1962 WP_046164594.1 peptide ABC transporter substrate-binding protein Regulator
  WH25_RS09295 (WH25_09295) pbp3 1941070..1942308 (+) 1239 WP_046164595.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  WH25_RS09300 (WH25_09300) sufB 1942717..1944129 (-) 1413 WP_046164596.1 Fe-S cluster assembly protein SufB -
  WH25_RS09305 (WH25_09305) sufU 1944147..1944584 (-) 438 WP_046164597.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72738.92 Da        Isoelectric Point: 4.8837

>NTDB_id=197438 WH25_RS09290 WP_046164594.1 1938817..1940778(-) (amiA) [Streptococcus gordonii strain IE35]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNSNRQTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADNKSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AVDDYTVQYTLNKPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATSFFYAFNYNRKAYNFTAKTTD
VQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEEDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDINIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEPGQNADLADKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDAYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=197438 WH25_RS09290 WP_046164594.1 1938817..1940778(-) (amiA) [Streptococcus gordonii strain IE35]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACGCTTGCTTCTGTTTTTACTTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATTCTAATCGTCAAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTAGCA
GAAGATTGGACGGTATCAAAAGATGGTTTGACTTATACATATAAGCTCCGGAAGGGTGCTAAATGGTACACTTCTGAGGG
TGAAGAGTATGCAGAAGTCAAAGCACAGGACTTTGTTACTGGTTTGAAGCATGCAGCAGACAACAAGTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGCTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGGTTGACGATTACACAGTCCAATATACACTCAACAAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACCGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCGAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACCTACTTTGATGGTTCTGATCAAGAGGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCAACATCATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTATAATTTCACAGCCAAGACAACAGAT
GTACAAAAGACATCTACAACGGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCTATCAACTTCGCTTTCAATCGGACGGT
TTATGGAGCTCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAACAGCTTGGTGCCACCAACATTCGTTCAGA
TTGGCGAAAAGAACTTTGGAGACATAGTTGAAGAAGATTTGGTGAGCTATGGTGATGAGTGGAAGGGTGTTAAATTAGAC
GATGCTCAAGATGGGCTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAGGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACCTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAGCAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCACTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAACAAAAATAATGTA
ACGTACTTTGCAGAGACTGCGGCTCAAAAAGACTACGATATCAATATTGCAGGTTGGGGGCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGACAAAGGAGATATGCTCCAAAATATCGGTTTGGAACCAGGACAAAATGCTGATT
TAGCAGACAAACTAGGCTTGAATGAATTTAAAAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACCGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGTTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAGTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGCTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.382

100

0.577
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.568
  amiA3 Streptococcus thermophilus LMG 18311

56.146

100

0.567

Multiple sequence alignment