Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   WH25_RS09255 Genome accession   NZ_CP017295
Coordinates   1927654..1928577 (-) Length   307 a.a.
NCBI ID   WP_046164588.1    Uniprot ID   -
Organism   Streptococcus gordonii strain IE35     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1922654..1933577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WH25_RS09220 (WH25_09220) - 1922797..1923021 (-) 225 WP_002893611.1 acyl carrier protein -
  WH25_RS09225 (WH25_09225) - 1923077..1924051 (-) 975 WP_046165204.1 beta-ketoacyl-ACP synthase III -
  WH25_RS09230 (WH25_09230) - 1924051..1924485 (-) 435 WP_008809618.1 MarR family winged helix-turn-helix transcriptional regulator -
  WH25_RS09235 (WH25_09235) - 1924624..1925415 (-) 792 WP_046165203.1 enoyl-CoA hydratase -
  WH25_RS09240 (WH25_09240) - 1925667..1927037 (+) 1371 WP_046165202.1 aspartate kinase -
  WH25_RS09255 (WH25_09255) amiF 1927654..1928577 (-) 924 WP_046164588.1 ATP-binding cassette domain-containing protein Regulator
  WH25_RS09260 (WH25_09260) amiE 1928588..1929655 (-) 1068 WP_046164589.1 ABC transporter ATP-binding protein Regulator
  WH25_RS09265 (WH25_09265) amiD 1929664..1930590 (-) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  WH25_RS09270 (WH25_09270) amiC 1930590..1932086 (-) 1497 WP_046164590.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34908.11 Da        Isoelectric Point: 6.7109

>NTDB_id=197431 WH25_RS09255 WP_046164588.1 1927654..1928577(-) (amiF) [Streptococcus gordonii strain IE35]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERVQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=197431 WH25_RS09255 WP_046164588.1 1927654..1928577(-) (amiF) [Streptococcus gordonii strain IE35]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTCGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGTGAAACTTTCTCGCTCGTTGGCGAATCAGGTTCAGGAAAGACTACTATCGGTCGTG
CAATCATTGGTTTGAATGAGACGAGTAAAGGGGAAATCTTCTTTGATGGTAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCATTTGTTTGAAAATGAAGAAGAAAGAGTTCAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCTGAACATTTGACACGTTATCCGCATGAATTCTCAGGTGGGCAACGTCAACGTATTGGG
ATAGCGCGGGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTCCAAAAAGAGCTAGGGTTGACCTACCTATTCATCGCTCACGATTTGTCAGTGG
TACGTTTCATTTCGGATCGTATCGCAGTTATCTATAAAGGTGTTATTGTTGAGGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCAGCCGTTCCAATTCCAGATCCAATCTTGGAGCGTAAAAAAGTTCT
TAAAGTTTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAATAAAACTGAAGTAGAGAACTATAAAAAAGAGCTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment