Detailed information NTG0196554

Bioinformatically predicted

Overview

• Name: comGA/cglA/cilD
• Type: Machinery gene
• Locus tag: BHS00_RS10575
• Genome accession: NZ_CP017194
• Coordinates: 1971231..1971974 (-)
• Length: 247 a.a.
• NCBI ID: WP_079504669.1
• Uniprot ID: -
• Organism: Lactococcus carnosus strain TMW 2.1612
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1966231..1976974

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BHS00_RS09525 (BHS00_09505)	-	1966565..1966855 (-)	291	WP_079504681.1	STAS-like domain-containing protein	-
BHS00_RS09530 (BHS00_09510)	-	1966843..1967733 (-)	891	WP_079504679.1	hypothetical protein	-
BHS00_RS09535 (BHS00_09515)	-	1967833..1968108 (-)	276	WP_079504677.1	hypothetical protein	-
BHS00_RS10685 (BHS00_09520)	-	1968114..1969019 (-)	906	WP_079504675.1	hypothetical protein	-
BHS00_RS09545 (BHS00_09525)	-	1969318..1970082 (+)	765	WP_079504673.1	helix-turn-helix domain-containing protein	-
BHS00_RS09550 (BHS00_09530)	-	1970097..1970765 (+)	669	WP_079504671.1	SHOCT domain-containing protein	-
BHS00_RS09555	-	1970883..1971290 (+)	408	Protein_1862	recombinase family protein	-
BHS00_RS10575 (BHS00_09535)	comGA/cglA/cilD	1971231..1971974 (-)	744	WP_079504669.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
BHS00_RS09565 (BHS00_09540)	-	1972099..1976493 (-)	4395	WP_079504667.1	PolC-type DNA polymerase III	-

Sequence

Protein

• Length: 247 a.a.
• Molecular weight: 27290.52 Da
• Isoelectric Point: 10.0172

>NTDB_id=196554 BHS00_RS10575 WP_079504669.1 1971231..1971974(-) (comGA/cglA/cilD) [Lactococcus carnosus strain TMW 2.1612]
MVQKLAKALLQAAVSFGASDVYILPVETTFAVSFRRSESRKHYITCSAAEGQSLISHFKFTAGMNVGEKRRPQLGACTYE
IGERSLRLRLSTAGDFENRESLVIRLLPDQAHPLLFWDKATLLSLKTAVVSRGLYLFSGPVGSGKTTLMHHVAKTNFADK
QVITIEDPVELVRPELLQFQLNEAIGNTYDSLIKLSLRHMPDLVIVGEIRDSTTARAVIRASLTGYTVFSTIHAKSVRGV
YASFTKS

Nucleotide

• Length: 744 bp

>NTDB_id=196554 BHS00_RS10575 WP_079504669.1 1971231..1971974(-) (comGA/cglA/cilD) [Lactococcus carnosus strain TMW 2.1612]
ATGGTTCAGAAATTAGCAAAAGCACTCTTACAAGCGGCAGTTAGCTTTGGTGCAAGCGATGTCTACATTTTACCAGTTGA
GACGACGTTTGCAGTTAGCTTTAGGCGTTCGGAGAGTCGTAAGCACTATATCACTTGTTCAGCTGCTGAGGGGCAAAGTT
TAATCTCACATTTCAAATTTACAGCTGGTATGAACGTTGGCGAAAAGCGACGCCCGCAGTTAGGTGCCTGTACCTATGAG
ATTGGTGAGCGCAGTCTGAGGCTAAGACTATCTACAGCAGGGGATTTTGAAAACCGAGAAAGTCTGGTCATTCGATTATT
GCCAGATCAAGCGCATCCCCTCTTGTTTTGGGATAAAGCGACGCTTCTATCACTGAAAACGGCGGTAGTCAGTCGGGGGC
TTTATCTATTTTCAGGACCAGTGGGTTCCGGGAAGACGACACTGATGCACCATGTTGCAAAAACCAATTTTGCAGATAAA
CAGGTCATTACGATAGAAGACCCAGTAGAACTTGTCAGGCCAGAGCTTTTGCAATTCCAACTCAATGAAGCGATTGGCAA
CACCTATGATAGTTTAATTAAATTATCTCTTAGACACATGCCGGATCTTGTCATTGTAGGAGAAATTCGAGATAGTACGA
CGGCTCGTGCGGTCATACGGGCTAGTTTGACGGGCTACACGGTATTTTCGACGATCCATGCCAAATCTGTTCGTGGTGTA
TATGCTAGCTTTACCAAAAGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (9-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGA/cglA/cilD	Streptococcus mitis NCTC 12261	57.851	97.976	0.567
comGA/cglA	Streptococcus sobrinus strain NIDR 6715-7	57.438	97.976	0.563
comYA	Streptococcus mutans UA159	56.79	98.381	0.559
comYA	Streptococcus mutans UA140	56.79	98.381	0.559
comGA	Lactococcus lactis subsp. cremoris KW2	57.261	97.571	0.559
comYA	Streptococcus gordonii str. Challis substr. CH1	56.432	97.571	0.551
comGA/cglA/cilD	Streptococcus pneumoniae R6	55.602	97.571	0.543
comGA/cglA/cilD	Streptococcus pneumoniae Rx1	55.602	97.571	0.543
comGA/cglA/cilD	Streptococcus pneumoniae D39	55.602	97.571	0.543
comGA/cglA/cilD	Streptococcus pneumoniae TIGR4	55.602	97.571	0.543
comGA	Bacillus subtilis subsp. subtilis str. 168	38.462	100	0.385
comGA	Latilactobacillus sakei subsp. sakei 23K	40.171	94.737	0.381