Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A7J08_RS00980 Genome accession   NZ_CP017088
Coordinates   157589..157984 (+) Length   131 a.a.
NCBI ID   WP_044676376.1    Uniprot ID   A0A0N0DPJ5
Organism   Streptococcus suis strain SRD478     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 152589..162984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J08_RS00950 (A7J08_00940) pepA 153207..154268 (-) 1062 WP_024414312.1 glutamyl aminopeptidase -
  A7J08_RS00955 (A7J08_00945) - 154481..154765 (+) 285 WP_105095738.1 DUF4651 domain-containing protein -
  A7J08_RS00960 (A7J08_00950) - 154762..155082 (+) 321 WP_024375735.1 thioredoxin family protein -
  A7J08_RS00965 (A7J08_00955) - 155127..156083 (+) 957 WP_148115629.1 DUF1002 domain-containing protein -
  A7J08_RS00970 (A7J08_00960) ytpR 156102..156725 (+) 624 WP_044685574.1 YtpR family tRNA-binding protein -
  A7J08_RS00975 (A7J08_00965) - 156758..157534 (-) 777 WP_053867390.1 DUF2785 domain-containing protein -
  A7J08_RS00980 (A7J08_00970) ssbA 157589..157984 (+) 396 WP_044676376.1 single-stranded DNA-binding protein Machinery gene
  A7J08_RS10330 - 158443..158610 (-) 168 WP_172409743.1 hypothetical protein -
  A7J08_RS00985 (A7J08_00975) groES 158807..159088 (+) 282 WP_014637330.1 co-chaperone GroES -
  A7J08_RS00990 (A7J08_00980) groL 159099..160721 (+) 1623 WP_024394710.1 chaperonin GroEL -
  A7J08_RS00995 (A7J08_00985) rpsL 160952..161365 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  A7J08_RS01000 (A7J08_00990) rpsG 161382..161852 (+) 471 WP_148115630.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14881.73 Da        Isoelectric Point: 5.0026

>NTDB_id=195386 A7J08_RS00980 WP_044676376.1 157589..157984(+) (ssbA) [Streptococcus suis strain SRD478]
MYNKTILIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISVDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=195386 A7J08_RS00980 WP_044676376.1 157589..157984(+) (ssbA) [Streptococcus suis strain SRD478]
ATGTATAATAAAACAATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATTTGAC
TCGTGTAACCATTGCAGTTAATAGACGATTTAAGACAGAAAATGGTGAACGTGAGGCAGATTTTCTCAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTTTCCTATGGCAGCAAGGGCAGTCTAATTTCTGTTGACGGTGAATTGCGGACCCGT
AAATACGAAAAAGACGGCAGCAATCACTATGTGACAGAGATTCTAGGCCAATCTTTCCAATTACTAGAAAGTCGCGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGATCTGGCTGACTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0N0DPJ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.046

100

0.74
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus mitis NCTC 12261

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB Lactococcus lactis subsp. cremoris KW2

66.071

85.496

0.565
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389

Multiple sequence alignment