Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CCZ36_RS06205 Genome accession   NZ_CP021707
Coordinates   1384565..1385227 (+) Length   220 a.a.
NCBI ID   WP_069743196.1    Uniprot ID   -
Organism   Streptomyces sp. S063     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379565..1390227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS06185 - 1380838..1381608 (+) 771 WP_069739502.1 IclR family transcriptional regulator -
  CCZ36_RS06190 - 1381608..1382087 (+) 480 WP_128817170.1 GNAT family N-acetyltransferase -
  CCZ36_RS06195 - 1382188..1383267 (+) 1080 WP_237302598.1 hypothetical protein -
  CCZ36_RS06200 - 1383264..1384568 (+) 1305 WP_128817171.1 histidine kinase -
  CCZ36_RS06205 vraR 1384565..1385227 (+) 663 WP_069743196.1 response regulator transcription factor Regulator
  CCZ36_RS06210 - 1385318..1386769 (+) 1452 WP_069743195.1 penicillin-binding transpeptidase domain-containing protein -
  CCZ36_RS06215 - 1387060..1388336 (+) 1277 Protein_1238 MFS transporter -
  CCZ36_RS06220 - 1388322..1389497 (-) 1176 WP_069739487.1 hypothetical protein -
  CCZ36_RS34715 - 1389494..1389658 (-) 165 WP_164873449.1 hypothetical protein -
  CCZ36_RS06225 - 1389892..1390113 (+) 222 WP_010070345.1 hypothetical protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23302.77 Da        Isoelectric Point: 4.7411

>NTDB_id=195088 CCZ36_RS06205 WP_069743196.1 1384565..1385227(+) (vraR) [Streptomyces sp. S063]
MSADPVRVVLADDERMVRTALRVILDAEEGIEVVGEATTGAEAVSVVRELRPDVVLMDVRMPEIDGIRATEQILATLEDP
PRIVVVTTFENDAYVYEALHAGAAGFLLKRAAAEELVQAVRLVACGDSLLYPAAVRTLAAEHAARQPAKAPAWVARLTDR
EADVLRLMAAGLTNAEIAGRLSVGPATAKTHVAAVLAKTGARDRTQAVIAAYESGFITPG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=195088 CCZ36_RS06205 WP_069743196.1 1384565..1385227(+) (vraR) [Streptomyces sp. S063]
ATGAGCGCGGATCCGGTGCGGGTGGTGCTCGCGGACGACGAGCGGATGGTGCGTACGGCGCTGCGGGTGATCCTGGACGC
CGAGGAGGGCATCGAGGTCGTCGGGGAGGCGACCACCGGCGCGGAGGCCGTCTCCGTGGTGCGGGAGCTGCGGCCGGACG
TGGTGCTGATGGACGTACGGATGCCGGAGATCGACGGCATCCGGGCCACGGAACAGATCCTCGCCACGCTGGAGGACCCG
CCGAGGATCGTCGTCGTGACGACCTTCGAGAACGACGCGTACGTGTACGAAGCCCTGCACGCCGGGGCGGCCGGGTTCCT
GTTGAAGCGGGCCGCGGCGGAGGAGCTGGTGCAGGCGGTGCGCCTGGTGGCGTGCGGCGACTCGCTCCTCTACCCGGCGG
CGGTACGCACGCTGGCCGCCGAACACGCCGCACGGCAGCCGGCGAAGGCCCCGGCGTGGGTGGCGCGGCTGACCGACCGG
GAGGCGGACGTGCTGCGGCTGATGGCGGCGGGGCTGACCAACGCGGAGATCGCCGGCCGGCTCTCGGTGGGCCCGGCGAC
GGCGAAGACACATGTGGCGGCGGTCCTCGCGAAGACCGGCGCCCGGGATCGCACCCAGGCGGTCATCGCGGCGTACGAGT
CCGGTTTCATCACCCCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-121)

Bacterial regulatory proteins, luxR family (GerE)

(157-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.85

97.273

0.368
  degU Bacillus subtilis subsp. subtilis str. 168

35.398

100

0.364

Multiple sequence alignment