Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CCZ36_RS05820 Genome accession   NZ_CP021707
Coordinates   1306120..1306764 (-) Length   214 a.a.
NCBI ID   WP_069740595.1    Uniprot ID   A0ABQ2TPI6
Organism   Streptomyces sp. S063     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1301120..1311764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ36_RS05790 - 1301297..1302069 (-) 773 Protein_1154 sulfite exporter TauE/SafE family protein -
  CCZ36_RS05795 - 1302148..1303128 (-) 981 WP_010061443.1 SPFH domain-containing protein -
  CCZ36_RS05800 - 1303294..1303722 (-) 429 WP_069743241.1 NfeD family protein -
  CCZ36_RS05805 - 1303829..1304626 (-) 798 WP_069740598.1 ABC transporter ATP-binding protein -
  CCZ36_RS05810 - 1304771..1305562 (+) 792 WP_069740597.1 hypothetical protein -
  CCZ36_RS05815 - 1305719..1305970 (-) 252 WP_069740596.1 chaplin -
  CCZ36_RS05820 vraR 1306120..1306764 (-) 645 WP_069740595.1 response regulator transcription factor Regulator
  CCZ36_RS05825 - 1306757..1307902 (-) 1146 WP_069740594.1 GAF domain-containing sensor histidine kinase -
  CCZ36_RS05830 - 1308145..1308870 (+) 726 WP_069740593.1 SDR family oxidoreductase -
  CCZ36_RS05835 - 1308867..1310128 (+) 1262 Protein_1163 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  CCZ36_RS05840 - 1310401..1311177 (+) 777 WP_006123564.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23141.45 Da        Isoelectric Point: 5.3843

>NTDB_id=195087 CCZ36_RS05820 WP_069740595.1 1306120..1306764(-) (vraR) [Streptomyces sp. S063]
MADKIIRVLLVDDHQVVRRGLRTFLEIQEDIEVVGEASDGAEGVTRTEELRPDVVLMDIKMPGTDGIEALRRLRELDNPA
KVLIVTSFTEQRTVVPALRAGASGYVYKDVDPDALAGAIRSVHAGHVLLQPEVAGALLAQEDAGTGTGRGSTLTEREREV
LGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGAVG

Nucleotide


Download         Length: 645 bp        

>NTDB_id=195087 CCZ36_RS05820 WP_069740595.1 1306120..1306764(-) (vraR) [Streptomyces sp. S063]
GTGGCTGACAAGATCATCAGGGTGCTGCTGGTCGACGACCATCAGGTGGTCCGCCGCGGACTGCGCACGTTCCTGGAGAT
CCAGGAGGACATAGAGGTCGTCGGCGAGGCGTCCGACGGCGCGGAGGGCGTGACCCGGACCGAGGAGCTGCGCCCCGACG
TCGTGCTGATGGACATCAAGATGCCCGGCACCGACGGCATCGAGGCGCTGCGCCGCCTGCGGGAACTCGACAACCCGGCC
AAGGTCCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCCGCCCTGCGCGCCGGAGCCTCCGGTTACGTCTA
CAAAGACGTCGACCCGGACGCCCTGGCGGGGGCGATCCGCTCGGTCCACGCCGGACACGTCCTGCTCCAGCCCGAGGTCG
CCGGGGCCCTCCTCGCCCAGGAGGACGCGGGCACCGGCACGGGCCGGGGGAGCACGCTCACCGAGCGGGAACGCGAGGTG
CTCGGCCTCATCGCCGACGGCCGCTCCAACCGGGAGATCGCCCGGGCTCTCGTCCTCTCCGAGAAGACGGTCAAGACCCA
TGTCTCGAACATCCTGATGAAGCTGGACCTGGCCGACCGCACCCAGGCGGCGCTGTGGGCGGTACGCCACGGAGCCGTGG
GCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-119)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.498

97.664

0.435
  degU Bacillus subtilis subsp. subtilis str. 168

39.462

100

0.411

Multiple sequence alignment