Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BFW41_RS02235 Genome accession   NZ_CP016990
Coordinates   475587..476828 (-) Length   413 a.a.
NCBI ID   WP_118880269.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain ZYAH75     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 470587..481828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BFW41_RS02205 (BFW41_02155) - 471427..472611 (+) 1185 WP_118880263.1 tetratricopeptide repeat protein -
  BFW41_RS02210 (BFW41_02160) mutT 472620..473033 (+) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  BFW41_RS02215 (BFW41_02165) yacG 473094..473288 (-) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  BFW41_RS02220 (BFW41_02170) zapD 473298..474020 (-) 723 WP_024945431.1 cell division protein ZapD -
  BFW41_RS02225 (BFW41_02175) coaE 474058..474672 (-) 615 WP_118880265.1 dephospho-CoA kinase -
  BFW41_RS02230 (BFW41_02180) pilD 474692..475564 (-) 873 WP_118880267.1 A24 family peptidase Machinery gene
  BFW41_RS02235 (BFW41_02185) pilC 475587..476828 (-) 1242 WP_118880269.1 type II secretion system F family protein Machinery gene
  BFW41_RS02240 (BFW41_02190) pilB 476944..478650 (-) 1707 WP_029302067.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  BFW41_RS02245 - 478657..479073 (-) 417 WP_118882219.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BFW41_RS02255 (BFW41_02195) nadC 479396..480253 (-) 858 WP_118880271.1 carboxylating nicotinate-nucleotide diphosphorylase -
  BFW41_RS02260 (BFW41_02200) - 480259..480729 (-) 471 WP_024944772.1 retropepsin-like aspartic protease -
  BFW41_RS02265 (BFW41_02205) ampD 480877..481449 (+) 573 WP_118880273.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45422.58 Da        Isoelectric Point: 9.8637

>NTDB_id=194375 BFW41_RS02235 WP_118880269.1 475587..476828(-) (pilC) [Aeromonas hydrophila strain ZYAH75]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
IAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=194375 BFW41_RS02235 WP_118880269.1 475587..476828(-) (pilC) [Aeromonas hydrophila strain ZYAH75]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAGCAAGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCGTCTCGCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAAAGCCTGCAGATCATCGCTCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGCCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAAGCGCTGCGCCGCCATCCCC
GCCACTTTGACGATCTCTACTGCGATCTAGTGGAGGCTGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCAGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATATTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTTGTCATTCCCCAGTTCGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTACGTGATCTTTGGCGGCATAGCG
ATCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATATTGACCAT
CCCCGTGGTTGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACTCTCTCCACTACCTTCTCCGCCGGCA
TCCCGCTGGTAGATGCCTTGGTCTCTGCGGCAGGCGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGT
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
AATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGTTGGGGGTGCTGGTCGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGATCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

45.906

97.579

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366

Multiple sequence alignment