Detailed information NTG0194374

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BFW41_RS02230
• Genome accession: NZ_CP016990
• Coordinates: 474692..475564 (-)
• Length: 290 a.a.
• NCBI ID: WP_118880267.1
• Uniprot ID: -
• Organism: Aeromonas hydrophila strain ZYAH75
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 469692..480564

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BFW41_RS02205 (BFW41_02155)	-	471427..472611 (+)	1185	WP_118880263.1	tetratricopeptide repeat protein	-
BFW41_RS02210 (BFW41_02160)	mutT	472620..473033 (+)	414	WP_016352173.1	8-oxo-dGTP diphosphatase MutT	-
BFW41_RS02215 (BFW41_02165)	yacG	473094..473288 (-)	195	WP_005305661.1	DNA gyrase inhibitor YacG	-
BFW41_RS02220 (BFW41_02170)	zapD	473298..474020 (-)	723	WP_024945431.1	cell division protein ZapD	-
BFW41_RS02225 (BFW41_02175)	coaE	474058..474672 (-)	615	WP_118880265.1	dephospho-CoA kinase	-
BFW41_RS02230 (BFW41_02180)	pilD	474692..475564 (-)	873	WP_118880267.1	A24 family peptidase	Machinery gene
BFW41_RS02235 (BFW41_02185)	pilC	475587..476828 (-)	1242	WP_118880269.1	type II secretion system F family protein	Machinery gene
BFW41_RS02240 (BFW41_02190)	pilB	476944..478650 (-)	1707	WP_029302067.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
BFW41_RS02245	-	478657..479073 (-)	417	WP_118882219.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
BFW41_RS02255 (BFW41_02195)	nadC	479396..480253 (-)	858	WP_118880271.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32508.77 Da
• Isoelectric Point: 6.7409

>NTDB_id=194374 BFW41_RS02230 WP_118880267.1 474692..475564(-) (pilD) [Aeromonas hydrophila strain ZYAH75]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLGYFNPETQPQQEERYNLMVPRSACPHCGHA
ITAIENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATYPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLTGGFAPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAFIGIGLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide

• Length: 873 bp

>NTDB_id=194374 BFW41_RS02230 WP_118880267.1 474692..475564(-) (pilD) [Aeromonas hydrophila strain ZYAH75]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTCTCGCTGGTATTCCTCTTTTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTCATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCTCGGCTATTTCA
ATCCGGAAACACAGCCGCAGCAGGAAGAACGCTACAACCTGATGGTACCGCGTTCTGCCTGCCCCCATTGCGGCCACGCA
ATCACGGCCATAGAGAACATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGGCGCTGCCGTGAATGCCAGGCCCCCATCTC
GGCCCGTTATCCTCTGGTAGAGCTGCTGACGGCCCTGCTCTCGCTGGTCGTCGCCGCAACATACCCACCGGGCTGGGGCT
TGCTGGCTGCCTTGCTGCTCACCTGGGTGCTGGTGGCACTCACTTTCATCGATCTGGACAAGATGCTTCTGCCGGACCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGACAGGGGGATTTGCGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCCGGCTATCTGGTACTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGTGCTTGGCTCGGCTGGCAGGCACTGCCCATCGTGCTGCTGCTCTCATCGCTG
GTTGGCGCTTTCATCGGGATTGGTCTCATCCTGCTGCGCAACCATCATCAGAACAAACCCATCCCCTTCGGTCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGATGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.672	98.966	0.61
pilD	Vibrio campbellii strain DS40M4	55.401	98.966	0.548
pilD	Acinetobacter baumannii D1279779	53.873	97.931	0.528
pilD	Acinetobacter nosocomialis M2	53.873	97.931	0.528
pilD	Neisseria gonorrhoeae MS11	49.084	94.138	0.462