Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | BFM96_RS01670 | Genome accession | NZ_CP016953 |
| Coordinates | 351247..351642 (-) | Length | 131 a.a. |
| NCBI ID | WP_068989532.1 | Uniprot ID | A0A917ED84 |
| Organism | Streptococcus himalayensis strain HTS2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 346247..356642
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFM96_RS01640 | - | 346259..346999 (-) | 741 | WP_068989518.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| BFM96_RS01645 | prmA | 347000..347944 (-) | 945 | WP_068989521.1 | 50S ribosomal protein L11 methyltransferase | - |
| BFM96_RS01650 | - | 347955..348863 (-) | 909 | WP_068989524.1 | GIY-YIG nuclease family protein | - |
| BFM96_RS01655 | - | 348866..349336 (-) | 471 | WP_068989526.1 | DUF3013 family protein | - |
| BFM96_RS01660 | - | 349422..350690 (+) | 1269 | WP_068989529.1 | replication-associated recombination protein A | - |
| BFM96_RS01670 | ssbB/cilA | 351247..351642 (-) | 396 | WP_068989532.1 | single-stranded DNA-binding protein | Machinery gene |
| BFM96_RS10750 | - | 351830..352291 (+) | 462 | Protein_323 | transposase family protein | - |
| BFM96_RS01680 | - | 352314..352829 (-) | 516 | WP_068989538.1 | hypothetical protein | - |
| BFM96_RS01685 | - | 353054..353716 (-) | 663 | WP_068989541.1 | DUF6287 domain-containing protein | - |
| BFM96_RS11050 | - | 353826..355220 (-) | 1395 | WP_068989544.1 | SH3 domain-containing protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14858.89 Da Isoelectric Point: 6.9846
>NTDB_id=193993 BFM96_RS01670 WP_068989532.1 351247..351642(-) (ssbB/cilA) [Streptococcus himalayensis strain HTS2]
MYNKVILIGRLVSTPELKKTPNDKSVARVTVAVNRRYKDQNGEREADFVNVVVWGRLAETLASYATKGSLISLDGELRTR
KYDKNGVTHYVTEVLCNGFQLLESRAQRAMRENNVAEDLADLVLEQEELPF
MYNKVILIGRLVSTPELKKTPNDKSVARVTVAVNRRYKDQNGEREADFVNVVVWGRLAETLASYATKGSLISLDGELRTR
KYDKNGVTHYVTEVLCNGFQLLESRAQRAMRENNVAEDLADLVLEQEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=193993 BFM96_RS01670 WP_068989532.1 351247..351642(-) (ssbB/cilA) [Streptococcus himalayensis strain HTS2]
ATGTATAATAAAGTAATTTTAATCGGTCGTTTGGTGAGTACACCAGAATTGAAAAAAACACCGAATGACAAATCGGTGGC
GCGTGTTACAGTAGCCGTTAATCGTCGCTACAAAGACCAAAACGGAGAGCGAGAAGCTGATTTTGTAAATGTCGTAGTTT
GGGGACGTCTTGCAGAAACCCTAGCCAGCTATGCCACGAAAGGAAGTTTGATTTCGCTGGATGGTGAATTGCGGACACGC
AAGTATGATAAGAACGGAGTCACTCACTATGTCACAGAAGTACTCTGCAATGGATTCCAATTGTTAGAAAGTCGAGCACA
ACGTGCGATGCGTGAAAACAATGTCGCTGAAGATTTAGCAGATCTTGTCTTGGAGCAAGAAGAGCTACCTTTCTAA
ATGTATAATAAAGTAATTTTAATCGGTCGTTTGGTGAGTACACCAGAATTGAAAAAAACACCGAATGACAAATCGGTGGC
GCGTGTTACAGTAGCCGTTAATCGTCGCTACAAAGACCAAAACGGAGAGCGAGAAGCTGATTTTGTAAATGTCGTAGTTT
GGGGACGTCTTGCAGAAACCCTAGCCAGCTATGCCACGAAAGGAAGTTTGATTTCGCTGGATGGTGAATTGCGGACACGC
AAGTATGATAAGAACGGAGTCACTCACTATGTCACAGAAGTACTCTGCAATGGATTCCAATTGTTAGAAAGTCGAGCACA
ACGTGCGATGCGTGAAAACAATGTCGCTGAAGATTTAGCAGATCTTGTCTTGGAGCAAGAAGAGCTACCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
84.733 |
100 |
0.847 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis SK321 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
82.443 |
100 |
0.824 |
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
73.282 |
100 |
0.733 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
80.916 |
0.405 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
43.59 |
89.313 |
0.389 |