Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BEN76_RS14880 Genome accession   NZ_CP016896
Coordinates   3143057..3144283 (-) Length   408 a.a.
NCBI ID   WP_076033405.1    Uniprot ID   A0A1P8ELV8
Organism   Acinetobacter soli strain GFJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3138057..3149283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN76_RS14850 (BEN76_14850) - 3138088..3139392 (+) 1305 WP_076033403.1 tetratricopeptide repeat protein -
  BEN76_RS14855 (BEN76_14855) - 3139477..3139803 (+) 327 WP_004932453.1 pyrimidine/purine nucleoside phosphorylase -
  BEN76_RS14860 (BEN76_14860) rlmB 3139906..3140652 (+) 747 WP_004932455.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  BEN76_RS14865 (BEN76_14865) - 3140690..3141619 (+) 930 WP_004932459.1 DMT family transporter -
  BEN76_RS14870 (BEN76_14870) coaE 3141595..3142194 (-) 600 WP_076033404.1 dephospho-CoA kinase -
  BEN76_RS14875 (BEN76_14875) pilD 3142197..3143057 (-) 861 WP_025095300.1 prepilin peptidase Machinery gene
  BEN76_RS14880 (BEN76_14880) pilC 3143057..3144283 (-) 1227 WP_076033405.1 type II secretion system F family protein Machinery gene
  BEN76_RS14885 (BEN76_14885) pilB 3144307..3146022 (-) 1716 WP_076033613.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BEN76_RS14890 (BEN76_14890) tpiA 3146286..3147083 (+) 798 WP_004932474.1 triose-phosphate isomerase -
  BEN76_RS14895 (BEN76_14895) secG 3147093..3147422 (+) 330 WP_004932477.1 preprotein translocase subunit SecG -
  BEN76_RS14915 (BEN76_14915) rimP 3148499..3149023 (+) 525 WP_004932478.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45197.59 Da        Isoelectric Point: 10.0755

>NTDB_id=193546 BEN76_RS14880 WP_076033405.1 3143057..3144283(-) (pilC) [Acinetobacter soli strain GFJ2]
MAAKKVQTVPTFAYEGVDRKGIKLKGELSARNMALAKVTLRKQGITIRTIREKRRNLLEGLFKKKVKPLDITIFTRQLAT
MMKAGVPLVQAFEIVAEGLDNPAMREVVLGLKTDVEGGNTFAGALRKYPQHFDNLFCSLIESGEQSGSLETMLERVAVYK
EKSEVLKQKIKKAMKYPAMVIVVAIVVTIILMVKVVPVFKDLFTSFGADLPAFTQMVVNMSNWMQSYWILLIFIIGTVIA
GFLEARKRSKTFRDRLDQLVLRLPIVGDLVYKAIIARYSRTLATTFAAGVPLIDALASTAGATNNSIYERAVLKIRDDVS
TGQQLHFAMRVSNRFPTMAIQMVAIGEESGALDEMLDKVANYYESEVDHAVDGLTSMMEPLIMAILGILVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=193546 BEN76_RS14880 WP_076033405.1 3143057..3144283(-) (pilC) [Acinetobacter soli strain GFJ2]
ATGGCAGCAAAAAAAGTACAAACAGTGCCCACTTTCGCGTATGAAGGTGTTGATCGCAAGGGGATCAAACTTAAAGGGGA
GCTTTCTGCCCGTAATATGGCATTGGCCAAAGTCACTTTGCGTAAACAAGGCATTACCATTCGAACCATTCGTGAAAAGC
GCCGCAACCTGCTTGAAGGACTATTTAAGAAAAAAGTTAAACCGCTCGATATCACGATTTTTACTCGCCAGTTGGCAACC
ATGATGAAAGCAGGTGTACCGCTGGTTCAGGCCTTTGAAATTGTCGCTGAGGGCTTGGATAATCCTGCCATGCGCGAGGT
GGTACTCGGACTCAAAACAGATGTCGAAGGAGGCAATACTTTTGCTGGTGCGCTGCGCAAATATCCACAGCACTTCGATA
ATCTGTTTTGCTCTCTAATTGAGTCGGGTGAACAATCGGGTTCGCTTGAAACCATGCTAGAGCGAGTTGCGGTATATAAA
GAAAAAAGTGAAGTATTAAAGCAAAAAATCAAAAAAGCCATGAAGTATCCGGCTATGGTAATTGTGGTCGCGATCGTGGT
GACCATCATTTTGATGGTGAAAGTGGTTCCGGTATTTAAAGATTTATTTACCTCATTTGGCGCAGACTTGCCAGCCTTTA
CCCAGATGGTGGTGAACATGTCCAACTGGATGCAGTCTTACTGGATATTGCTCATTTTCATTATCGGTACGGTGATTGCT
GGCTTTTTAGAGGCACGTAAACGCAGCAAAACTTTTCGTGATCGTCTAGATCAACTCGTGCTTCGTTTGCCGATTGTGGG
TGATCTGGTCTATAAAGCCATTATTGCCCGTTATAGTCGTACCCTTGCCACCACTTTCGCAGCGGGTGTCCCGCTGATTG
ATGCGCTGGCATCTACCGCAGGTGCAACCAATAACAGTATTTATGAACGTGCTGTGCTTAAAATTCGTGATGATGTGTCT
ACAGGCCAGCAGCTTCATTTTGCCATGCGCGTGTCGAATCGTTTCCCCACGATGGCCATTCAAATGGTGGCCATTGGTGA
AGAATCTGGGGCACTAGATGAAATGCTGGACAAAGTTGCGAATTATTATGAAAGTGAAGTCGATCACGCGGTAGACGGAC
TTACATCGATGATGGAACCCTTGATTATGGCAATTCTGGGCATTTTAGTGGGTGGTCTGGTGATTGCGATGTATCTTCCG
ATTTTCCAAATGGGTTCAGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1P8ELV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

91.667

100

0.917
  pilC Acinetobacter baumannii D1279779

85.294

100

0.853
  pilC Pseudomonas stutzeri DSM 10701

59.413

100

0.596
  pilC Legionella pneumophila strain ERS1305867

53.015

97.549

0.517
  pilG Neisseria gonorrhoeae MS11

46.115

97.794

0.451
  pilG Neisseria meningitidis 44/76-A

45.865

97.794

0.449
  pilC Vibrio cholerae strain A1552

42.752

99.755

0.426
  pilC Vibrio campbellii strain DS40M4

43.25

98.039

0.424
  pilC Thermus thermophilus HB27

36.973

98.775

0.365

Multiple sequence alignment