Detailed information NTG0193545

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BEN76_RS14875
• Genome accession: NZ_CP016896
• Coordinates: 3142197..3143057 (-)
• Length: 286 a.a.
• NCBI ID: WP_025095300.1
• Uniprot ID: A0A1P8ELZ2
• Organism: Acinetobacter soli strain GFJ2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3137197..3148057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN76_RS14850 (BEN76_14850)	-	3138088..3139392 (+)	1305	WP_076033403.1	tetratricopeptide repeat protein	-
BEN76_RS14855 (BEN76_14855)	-	3139477..3139803 (+)	327	WP_004932453.1	pyrimidine/purine nucleoside phosphorylase	-
BEN76_RS14860 (BEN76_14860)	rlmB	3139906..3140652 (+)	747	WP_004932455.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
BEN76_RS14865 (BEN76_14865)	-	3140690..3141619 (+)	930	WP_004932459.1	DMT family transporter	-
BEN76_RS14870 (BEN76_14870)	coaE	3141595..3142194 (-)	600	WP_076033404.1	dephospho-CoA kinase	-
BEN76_RS14875 (BEN76_14875)	pilD	3142197..3143057 (-)	861	WP_025095300.1	prepilin peptidase	Machinery gene
BEN76_RS14880 (BEN76_14880)	pilC	3143057..3144283 (-)	1227	WP_076033405.1	type II secretion system F family protein	Machinery gene
BEN76_RS14885 (BEN76_14885)	pilB	3144307..3146022 (-)	1716	WP_076033613.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BEN76_RS14890 (BEN76_14890)	tpiA	3146286..3147083 (+)	798	WP_004932474.1	triose-phosphate isomerase	-
BEN76_RS14895 (BEN76_14895)	secG	3147093..3147422 (+)	330	WP_004932477.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31952.24 Da
• Isoelectric Point: 7.9064

>NTDB_id=193545 BEN76_RS14875 WP_025095300.1 3142197..3143057(-) (pilD) [Acinetobacter soli strain GFJ2]
MSDIFSYFITNSTALYLAIGILSLCIGSFLNVVIYRTPKMMEQEWTQECQLLLHPEQAVIETEKLSLSSPASSCPHCRAP
IRWYHNIPVLSWLALRGKCHACDHPITIRYPAIEVLTLLTSLTVLMVLGPTLKMLFGLVLTWMLIALTFIDFDTQLLPDR
YTLTLAGLGLAINSAHVYVSPNEAIWGYVIGFLCLWVVYYLFKLLTKKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSF
VGAIIGVVLLRIRKQNQPFAFGPFIAIAGWIAFLWGDAIMRVYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=193545 BEN76_RS14875 WP_025095300.1 3142197..3143057(-) (pilD) [Acinetobacter soli strain GFJ2]
ATGTCTGATATCTTCTCGTATTTTATTACCAATTCGACTGCGCTTTATCTCGCGATTGGTATCTTAAGCCTCTGTATTGG
CAGCTTTTTAAATGTGGTGATCTACCGCACACCAAAAATGATGGAGCAGGAATGGACACAAGAGTGCCAGTTGTTGCTGC
ATCCAGAACAGGCCGTGATTGAAACCGAAAAACTCAGTCTAAGTTCACCTGCATCTTCATGTCCGCATTGTCGTGCGCCA
ATTCGCTGGTATCACAATATTCCAGTGCTAAGCTGGCTGGCTTTACGCGGGAAATGTCATGCGTGTGACCACCCGATTAC
AATCCGCTACCCCGCCATTGAAGTACTTACGCTGCTGACCTCACTGACTGTGCTGATGGTTTTGGGGCCAACGCTTAAAA
TGTTGTTTGGGCTAGTGCTCACTTGGATGTTAATTGCGCTGACCTTTATCGACTTTGATACTCAGCTTTTACCAGATCGC
TATACCCTCACCCTTGCAGGATTAGGCTTGGCCATCAATAGCGCGCATGTGTATGTTTCTCCCAATGAAGCCATCTGGGG
CTATGTCATCGGCTTTTTGTGTTTATGGGTGGTGTATTACTTGTTTAAACTGCTCACCAAAAAAGAAGGCATGGGATACG
GCGATTTCAAACTACTGGCAGCGCTGGGGGCTTGGATGGGGCCGCTAATGCTGCCGTTGATTGTGCTGTTATCGTCGTTT
GTGGGGGCGATTATTGGTGTTGTACTTTTGCGTATTCGCAAGCAAAATCAGCCTTTTGCATTTGGTCCCTTTATTGCCAT
TGCGGGCTGGATTGCCTTTTTATGGGGAGATGCAATTATGCGGGTATATTTAGGAGGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A1P8ELZ2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	75.874	100	0.759
pilD	Acinetobacter nosocomialis M2	75.874	100	0.759
pilD	Vibrio cholerae strain A1552	53.903	94.056	0.507
pilD	Vibrio campbellii strain DS40M4	52.434	93.357	0.49
pilD	Neisseria gonorrhoeae MS11	46.565	91.608	0.427