Detailed information NTG0193545

Bioinformatically predicted

Overview

• Name: ysxA/radC
• Type: Machinery gene
• Locus tag: S101267_RS14185
• Genome accession: NZ_CP021505
• Coordinates: 2724179..2724874 (-)
• Length: 231 a.a.
• NCBI ID: WP_013353063.1
• Uniprot ID: A0A9P1JJ48
• Organism: Bacillus amyloliquefaciens strain SRCM101267
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2719179..2729874

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
S101267_RS14155 (S101267_02841)	-	2719193..2719996 (-)	804	WP_013353058.1	M23 family metallopeptidase	-
S101267_RS14160 (S101267_02842)	minD	2720125..2720928 (-)	804	WP_003152655.1	septum site-determining protein MinD	-
S101267_RS14165 (S101267_02843)	minC	2720931..2721611 (-)	681	WP_013353059.1	septum site-determining protein MinC	-
S101267_RS14170 (S101267_02844)	mreD	2721665..2722183 (-)	519	WP_014470782.1	rod shape-determining protein MreD	-
S101267_RS14175 (S101267_02845)	mreC	2722180..2723043 (-)	864	WP_013353061.1	rod shape-determining protein MreC	-
S101267_RS14180 (S101267_02846)	mreB	2723074..2724087 (-)	1014	WP_013353062.1	cell shape-determining protein MreB	-
S101267_RS14185 (S101267_02847)	ysxA/radC	2724179..2724874 (-)	696	WP_013353063.1	RadC family protein	Machinery gene
S101267_RS14190 (S101267_02848)	-	2724906..2725475 (-)	570	WP_013353064.1	Maf family protein	-
S101267_RS14195 (S101267_02849)	-	2725617..2726618 (-)	1002	WP_013353065.1	SPOR domain-containing protein	-
S101267_RS14200 (S101267_02850)	comC	2726745..2727497 (-)	753	WP_013353066.1	prepilin peptidase	Machinery gene
S101267_RS14205 (S101267_02851)	-	2727637..2728929 (-)	1293	WP_013353067.1	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	-

Sequence

Protein

• Length: 231 a.a.
• Molecular weight: 26066.29 Da
• Isoelectric Point: 8.9381

>NTDB_id=193545 S101267_RS14185 WP_013353063.1 2724179..2724874(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SRCM101267]
MIIRDLPLKLRDFPEKEKPRERLLHCGAEHLSNNELLAILLRTGTKHESVMNLSHRLLRTFDGLRLLKGASAQELSSIPG
IGTVKAVQILAAIELGSRIHKTSAGEHCVIRSPEDGAKYVMEDMRFLSQEHFVCLYLNTKNQVIHKRTIFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide

• Length: 696 bp

>NTDB_id=193545 S101267_RS14185 WP_013353063.1 2724179..2724874(-) (ysxA/radC) [Bacillus amyloliquefaciens strain SRCM101267]
TTGATCATCCGTGATCTGCCGTTAAAATTAAGAGATTTCCCCGAAAAAGAAAAACCGAGAGAGCGGCTTCTGCATTGCGG
GGCCGAACATCTTTCTAACAATGAATTGCTCGCCATTCTGCTGAGGACGGGAACGAAACATGAGTCCGTCATGAATCTCT
CTCACCGGCTGCTGCGGACGTTTGACGGGCTGCGCCTGTTAAAAGGCGCTTCTGCCCAGGAGCTTTCCAGCATCCCCGGA
ATCGGCACGGTGAAAGCCGTTCAGATCCTTGCTGCAATTGAGCTGGGGAGCCGTATTCATAAGACATCCGCCGGAGAGCA
TTGCGTCATCCGTTCTCCCGAAGACGGGGCGAAGTATGTGATGGAGGATATGCGCTTTTTATCCCAAGAGCATTTTGTCT
GTTTATATTTAAATACCAAAAATCAAGTCATTCATAAACGCACCATTTTTATCGGAAGTCTGAATTCATCTATTGTCCAC
CCGCGGGAGGTGTTTAAAGAAGCTTTCAAACGATCCGCCGCGTCCTTCATTTGCGTTCACAATCATCCTTCAGGAGATCC
CACACCGAGCAGGGAAGATATAGAAGTAACTAGACGGCTTTTTGAGTGCGGAAATTTAATCGGCATCGAGTTGCTGGATC
ATTTGGTCATTGGTGACAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

• UPF0758 N-terminal (UPF0758_N) (11-87)

• RadC-like JAB domain (RadC) (110-229)

3D structure

• AlphaFold DB: A0A9P1JJ48

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	87.879	100	0.879
radC	Streptococcus pneumoniae TIGR4	49.524	90.909	0.45
radC	Streptococcus pneumoniae R6	49.048	90.909	0.446
radC	Streptococcus pneumoniae D39	49.048	90.909	0.446
radC	Streptococcus gordonii str. Challis substr. CH1	47.143	90.909	0.429