Detailed information NTG0193286

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: BEN15_RS02150
• Genome accession: NZ_CP016877
• Coordinates: 428742..429134 (-)
• Length: 130 a.a.
• NCBI ID: WP_011227579.1
• Uniprot ID: A0A2S4DWC9
• Organism: Streptococcus thermophilus strain KLDS 3.1003
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 423742..434134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BEN15_RS02115 (BEN15_02120)	dapD	424080..424778 (-)	699	WP_065972608.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
BEN15_RS12025 (BEN15_02125)	-	424864..425618 (-)	755	Protein_413	HAD family hydrolase	-
BEN15_RS02125 (BEN15_02130)	-	425733..426566 (-)	834	WP_065972609.1	putative RNA methyltransferase	-
BEN15_RS02135 (BEN15_02140)	-	426935..427102 (+)	168	WP_065972610.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
BEN15_RS02140 (BEN15_02145)	-	427155..427418 (+)	264	WP_065972611.1	hypothetical protein	-
BEN15_RS02145 (BEN15_02150)	tadA	427499..428017 (-)	519	WP_014608735.1	tRNA adenosine(34) deaminase TadA	-
BEN15_RS02150 (BEN15_02155)	ssbA	428742..429134 (-)	393	WP_011227579.1	single-stranded DNA-binding protein	Machinery gene
BEN15_RS02155 (BEN15_02160)	-	429339..429566 (-)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
BEN15_RS02160 (BEN15_02165)	-	429581..430612 (-)	1032	WP_065972612.1	YeeE/YedE family protein	-
BEN15_RS02165 (BEN15_02170)	ytpR	430749..431372 (-)	624	WP_065972613.1	YtpR family tRNA-binding protein	-
BEN15_RS02170 (BEN15_02175)	-	431382..431696 (-)	315	WP_002945230.1	thioredoxin family protein	-
BEN15_RS02175 (BEN15_02180)	-	431693..431977 (-)	285	WP_065972614.1	DUF4651 domain-containing protein	-
BEN15_RS02180 (BEN15_02185)	pepA	432077..433144 (+)	1068	WP_065972615.1	glutamyl aminopeptidase	-
BEN15_RS02185 (BEN15_02190)	proC	433160..433930 (+)	771	WP_011226616.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14773.70 Da
• Isoelectric Point: 5.9275

>NTDB_id=193286 BEN15_RS02150 WP_011227579.1 428742..429134(-) (ssbA) [Streptococcus thermophilus strain KLDS 3.1003]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=193286 BEN15_RS02150 WP_011227579.1 428742..429134(-) (ssbA) [Streptococcus thermophilus strain KLDS 3.1003]
ATGTATAACAAAGTAATTTTAATTGGACGTTTAACAGCTACTCCTGAAATGGTTAAGACTGCTAGCGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCCTCTTATGCTAGTAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGCCAAACCCATTACGTTACTGAGGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGCTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

3D structure

• AlphaFold DB: A0A2S4DWC9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	80.153	100	0.808
ssbB/cilA	Streptococcus pneumoniae TIGR4	75.573	100	0.762
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus mitis SK321	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae R6	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae Rx1	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae D39	74.809	100	0.754
ssbB/cilA	Streptococcus mitis NCTC 12261	73.282	100	0.738
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	48.113	81.538	0.392
ssb	Latilactobacillus sakei subsp. sakei 23K	47.17	81.538	0.385