Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CA924_RS13640 Genome accession   NZ_CP021281
Coordinates   2990963..2991646 (+) Length   227 a.a.
NCBI ID   WP_014844635.1    Uniprot ID   Q5X240
Organism   Legionella pneumophila subsp. pneumophila strain Flint     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2985963..2996646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA924_RS13620 - 2985977..2987710 (+) 1734 WP_014844631.1 tetratricopeptide repeat protein -
  CA924_RS13625 - 2987816..2989204 (-) 1389 WP_014844632.1 phosphomannomutase/phosphoglucomutase -
  CA924_RS13630 dut 2989205..2989663 (-) 459 WP_014844633.1 dUTP diphosphatase -
  CA924_RS13635 coaBC 2989690..2990886 (-) 1197 WP_014844634.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CA924_RS13640 radC 2990963..2991646 (+) 684 WP_014844635.1 DNA repair protein RadC Machinery gene
  CA924_RS13645 - 2991682..2991918 (+) 237 WP_014844636.1 hypothetical protein -
  CA924_RS13650 lepB 2991998..2995882 (+) 3885 WP_014844637.1 Dot/Icm T4SS GTPase-activating effector LepB -
  CA924_RS13655 thpR 2996006..2996569 (-) 564 WP_015961643.1 RNA 2',3'-cyclic phosphodiesterase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25769.41 Da        Isoelectric Point: 6.7654

>NTDB_id=192249 CA924_RS13640 WP_014844635.1 2990963..2991646(+) (radC) [Legionella pneumophila subsp. pneumophila strain Flint]
MMVAHTAQQLDLREKLLTNGVHSLSDIELLAIFISSGNNRKSCLQLAYELTKHLGNLRNILNADLQSFKSIHGLGEVRYA
QLQAAKEICHRSDFIDLQKEIRLSNTQQTYAFLKKRLRDYKNETFAALFLDNQHRIIAYEELFSGTINTATVYPRPIVER
VLQLNAAALILAHNHPSGLSDASQQDLAITERIRDALDLVDARLLDHIVIGDNEVYSIFAENKWVCN

Nucleotide


Download         Length: 684 bp        

>NTDB_id=192249 CA924_RS13640 WP_014844635.1 2990963..2991646(+) (radC) [Legionella pneumophila subsp. pneumophila strain Flint]
ATGATGGTTGCCCATACAGCGCAGCAACTTGACTTGCGCGAAAAATTACTTACTAATGGAGTACATAGCCTCTCTGATAT
CGAATTGTTAGCCATTTTCATCAGTTCGGGTAACAATAGAAAATCTTGTTTGCAACTAGCCTATGAGCTTACCAAACACT
TGGGAAATTTACGTAATATCCTCAATGCTGATCTGCAAAGCTTTAAATCAATCCATGGATTAGGAGAAGTTCGCTATGCG
CAACTTCAGGCTGCGAAAGAAATATGTCATCGTAGTGATTTCATTGATCTGCAAAAAGAAATCCGGTTATCTAACACGCA
ACAAACTTATGCTTTTTTAAAAAAACGACTGCGAGACTACAAAAATGAAACTTTTGCCGCACTCTTTCTGGATAACCAAC
ACCGAATCATTGCTTATGAAGAATTATTCTCAGGAACCATCAACACAGCAACAGTCTATCCCAGACCGATTGTAGAACGT
GTATTGCAATTAAATGCTGCTGCTTTAATTCTGGCACATAATCACCCCTCGGGCTTGTCTGACGCAAGCCAGCAAGATTT
AGCCATTACAGAACGCATTCGAGATGCTCTGGACCTGGTAGATGCCCGGTTACTGGATCACATTGTCATTGGGGATAATG
AAGTGTATTCCATTTTTGCTGAGAACAAATGGGTATGTAACTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(104-222)

UPF0758 N-terminal (UPF0758_N)

(13-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5X240

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.393

94.273

0.419

Multiple sequence alignment