Detailed information NTG0191665

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CA928_RS06155
• Genome accession: NZ_CP021264
• Coordinates: 1359875..1360900 (+)
• Length: 341 a.a.
• NCBI ID: WP_027226811.1
• Uniprot ID: -
• Organism: Legionella pneumophila subsp. fraseri strain D-5387
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1354875..1365900

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CA928_RS06125	-	1355306..1355623 (+)	318	WP_027226805.1	DUF2845 domain-containing protein	-
CA928_RS06130	-	1355659..1356030 (+)	372	WP_027226806.1	protease inhibitor I42 family protein	-
CA928_RS06135	-	1356085..1357803 (-)	1719	WP_027226807.1	NAD-dependent malic enzyme	-
CA928_RS06140	-	1357883..1358266 (+)	384	WP_027226808.1	hypothetical protein	-
CA928_RS06145	surE	1358269..1359027 (+)	759	WP_027226809.1	5'/3'-nucleotidase SurE	-
CA928_RS06150	-	1359049..1359789 (+)	741	WP_032830130.1	peptidoglycan DD-metalloendopeptidase family protein	-
CA928_RS06155	rpoS	1359875..1360900 (+)	1026	WP_027226811.1	RNA polymerase sigma factor RpoS	Regulator
CA928_RS06160	hmgA	1361043..1362293 (-)	1251	WP_027226812.1	homogentisate 1,2-dioxygenase	-
CA928_RS06165	-	1362439..1363182 (+)	744	WP_027226813.1	YebC/PmpR family DNA-binding transcriptional regulator	-
CA928_RS06170	ruvC	1363182..1363706 (+)	525	WP_027226814.1	crossover junction endodeoxyribonuclease RuvC	-
CA928_RS06175	ruvA	1363703..1364302 (+)	600	WP_027226815.1	Holliday junction branch migration protein RuvA	Machinery gene
CA928_RS06180	-	1364361..1364681 (+)	321	WP_027226816.1	hypothetical protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 39479.78 Da
• Isoelectric Point: 4.3759

>NTDB_id=191665 CA928_RS06155 WP_027226811.1 1359875..1360900(+) (rpoS) [Legionella pneumophila subsp. fraseri strain D-5387]
MQDEEEPIKDKEFKEEEWSEPDDDSLLSEEDVEPDIEKMEEELDEFPEFIDEEAFPSFQRGKNIAKALDATQLYLGEIGF
SPLLTAEEEIHYATLALKGDMEARKKMIESNLRLVVKIARRYLNRGLPLLDLIEEGNLGLMKSVEKFDPKRGFRFSTYAT
WWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRAARQLTQKLDHEPSPEEIAEMVDKPLEDVQKLLGLNDKVASVDTPIG
FDETKSLLDTIADENSLNPAELLTNENLRQHIESLLDKLTENQQQVIARRFGLRGFEKATLEDVGKEIDLTRERVRQIQV
EALKTLRTLLERVGLTQEDLF

Nucleotide

• Length: 1026 bp

>NTDB_id=191665 CA928_RS06155 WP_027226811.1 1359875..1360900(+) (rpoS) [Legionella pneumophila subsp. fraseri strain D-5387]
ATGCAAGATGAAGAAGAGCCAATTAAGGACAAAGAATTTAAAGAAGAGGAATGGTCTGAGCCAGATGATGATTCTTTGCT
GTCAGAAGAAGATGTTGAACCAGATATCGAAAAAATGGAAGAAGAGCTTGATGAGTTTCCAGAGTTTATTGATGAGGAAG
CTTTTCCTTCATTCCAACGCGGGAAAAATATTGCCAAGGCTTTAGATGCGACTCAACTTTACCTGGGTGAAATTGGTTTT
TCTCCTTTGCTAACAGCTGAAGAAGAAATCCATTATGCGACTCTTGCTTTGAAAGGTGATATGGAAGCACGCAAGAAAAT
GATTGAGTCGAACTTGCGCCTGGTGGTTAAAATAGCCAGACGTTATCTTAATAGAGGATTACCTCTTCTTGATCTAATCG
AAGAGGGAAATCTGGGTTTAATGAAATCTGTTGAGAAATTTGATCCCAAGCGAGGGTTCCGTTTTTCAACTTATGCGACC
TGGTGGATTAGGCAAACCATAGAACGTGCCATTATGAATCAAACGAGAACTATCCGCTTGCCTATTCATGTGGTGAAAGA
ACTCAATGTTTATCTTAGAGCAGCAAGACAATTAACGCAAAAACTGGATCATGAACCATCTCCTGAAGAAATAGCAGAAA
TGGTTGATAAGCCTTTGGAGGATGTTCAAAAACTATTGGGCTTGAATGATAAAGTCGCTTCAGTTGATACCCCAATTGGA
TTTGATGAAACCAAATCTTTATTGGATACGATTGCTGATGAAAACAGTTTAAATCCTGCAGAACTATTAACCAATGAGAA
TTTAAGGCAACATATAGAATCTCTTTTGGATAAATTAACTGAGAATCAACAACAGGTTATCGCAAGACGCTTTGGGTTAA
GAGGTTTTGAAAAAGCAACACTTGAGGATGTTGGTAAGGAAATTGATTTGACTCGTGAACGCGTTCGCCAGATTCAGGTT
GAAGCTTTGAAGACGCTAAGAACCTTGTTGGAGCGGGTTGGATTAACGCAAGAGGATTTGTTTTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (69-101)

• Sigma-70 region 3 (Sigma70_r3) (187-261)

• Sigma-70 region 2 (Sigma70_r2) (107-176)

• Sigma-70, region 4 (Sigma70_r4) (275-327)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	67.509	81.232	0.548