Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BSY239_RS15055 Genome accession   NZ_CP016449
Coordinates   3217497..3218714 (+) Length   405 a.a.
NCBI ID   WP_069047506.1    Uniprot ID   A0A1B3LUC7
Organism   Hydrogenophaga sp. RAC07     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3212497..3223714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSY239_RS15030 (BSY239_3045) rpmA 3213654..3213911 (-) 258 WP_056273119.1 50S ribosomal protein L27 -
  BSY239_RS15035 (BSY239_3046) rplU 3213925..3214236 (-) 312 WP_069047504.1 50S ribosomal protein L21 -
  BSY239_RS15040 (BSY239_3047) - 3214504..3215433 (+) 930 WP_083240201.1 polyprenyl synthetase family protein -
  BSY239_RS15050 (BSY239_3049) pilB 3215731..3217464 (+) 1734 WP_069047505.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BSY239_RS15055 (BSY239_3050) pilC 3217497..3218714 (+) 1218 WP_069047506.1 type II secretion system F family protein Machinery gene
  BSY239_RS15060 (BSY239_3051) pilD 3218714..3219577 (+) 864 WP_069047507.1 A24 family peptidase Machinery gene
  BSY239_RS15065 (BSY239_3052) coaE 3219574..3220191 (+) 618 WP_069047508.1 dephospho-CoA kinase -
  BSY239_RS15070 (BSY239_3053) zapD 3220234..3220989 (+) 756 WP_069047509.1 cell division protein ZapD -
  BSY239_RS15075 (BSY239_3054) - 3221009..3221212 (+) 204 WP_069047510.1 DNA gyrase inhibitor YacG -
  BSY239_RS15080 (BSY239_3055) - 3221223..3221684 (-) 462 WP_069047511.1 NUDIX domain-containing protein -
  BSY239_RS15085 (BSY239_3056) - 3221681..3222559 (-) 879 WP_069047512.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44331.04 Da        Isoelectric Point: 9.1419

>NTDB_id=188362 BSY239_RS15055 WP_069047506.1 3217497..3218714(+) (pilC) [Hydrogenophaga sp. RAC07]
MATAATKSIKDVVFEWEGKDRNGKTVRGETRAVGENQVLAALRRQGIIPSKVKKRRMSSGKRIKPKDIAIFTRQLATMMK
AGVPLLQAFDIVGRGNPNPSVTKLLNDIRTDVETGTSLSAAFRKNPLYFDSLYCNLVEAGEAAGILEELLDRLAVYMEKT
EALKSKIKSALMYPIAVVIVAFVVVAVIMIFVIPSFKEVFSSFGADLPAPTLFVIAMSEFFTEYWWLIFGGLGGGFYFFM
QAWRRNEKVQRFMDRVLLKLPIFGVLIEKSVIARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAIATERIQQEVSTGT
SLTNAMTNANIFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=188362 BSY239_RS15055 WP_069047506.1 3217497..3218714(+) (pilC) [Hydrogenophaga sp. RAC07]
ATGGCAACCGCTGCAACCAAGAGCATCAAAGACGTCGTTTTCGAGTGGGAAGGCAAAGACCGCAACGGCAAGACGGTTCG
CGGTGAGACCCGTGCCGTGGGAGAGAACCAGGTGCTGGCGGCGCTGCGTCGCCAGGGCATCATCCCGAGCAAGGTGAAGA
AGCGCCGCATGAGCTCGGGCAAGCGCATCAAGCCGAAAGACATCGCGATCTTCACGCGCCAACTGGCCACCATGATGAAG
GCGGGTGTCCCCTTGCTGCAGGCGTTCGACATCGTCGGACGTGGCAACCCCAACCCCAGCGTGACCAAGCTGCTCAACGA
CATCCGCACCGACGTTGAGACCGGCACCTCGCTGAGTGCGGCTTTCCGCAAGAACCCCCTCTACTTCGACAGTCTGTACT
GCAATCTGGTGGAAGCCGGCGAAGCCGCCGGTATTCTGGAAGAGTTGCTGGACCGCCTCGCGGTCTACATGGAGAAGACC
GAGGCCCTCAAGTCAAAGATCAAGTCGGCGCTGATGTACCCCATCGCGGTGGTGATCGTGGCCTTCGTGGTGGTCGCCGT
GATCATGATCTTCGTGATCCCCTCCTTCAAGGAAGTGTTCAGTTCGTTCGGCGCAGACCTTCCCGCTCCCACCCTGTTCG
TGATCGCGATGAGCGAGTTCTTCACGGAATACTGGTGGCTGATCTTCGGTGGCCTAGGCGGCGGCTTCTACTTTTTCATG
CAGGCCTGGCGCCGCAATGAAAAGGTGCAGCGATTCATGGACCGTGTCTTGCTCAAGCTGCCGATCTTCGGTGTGCTGAT
CGAGAAGTCGGTGATTGCGCGCTGGACCCGCACGTTGTCGACCATGTTCGCTGCCGGTGTTCCGCTGGTGGAAGCGCTCG
ACTCGGTGGGCGGCGCTTCGGGCAACTCCGTTTATGCAATTGCCACCGAGCGCATCCAGCAGGAGGTGTCCACCGGGACC
AGCCTGACCAACGCGATGACCAACGCCAACATCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATTGGTGAAGAATCCGG
CTCGATCGACCACATGCTTGGAAAGGCAGCCGACTTTTACGAGGCGGAAGTGGACGACATGGTGGCCGGCATCTCCAGCC
TGATGGAGCCCATCATCATCGTGGTGCTGGGCACGGTCATCGGTGGCATCGTGGTGTCGATGTACCTGCCCATCTTCAAG
TTGGGTCAGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B3LUC7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

52.141

98.025

0.511
  pilG Neisseria meningitidis 44/76-A

51.889

98.025

0.509
  pilC Legionella pneumophila strain ERS1305867

51.005

98.272

0.501
  pilC Acinetobacter baylyi ADP1

49.144

100

0.496
  pilC Acinetobacter baumannii D1279779

48.371

98.519

0.477
  pilC Vibrio cholerae strain A1552

41.769

100

0.42
  pilC Vibrio campbellii strain DS40M4

39.75

98.765

0.393
  pilC Thermus thermophilus HB27

37.343

98.519

0.368

Multiple sequence alignment