Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BA894_RS13910 Genome accession   NZ_CP016351
Coordinates   3069688..3071391 (-) Length   567 a.a.
NCBI ID   WP_014233148.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16374     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3064688..3076391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA894_RS13890 (BA894_13890) - 3065394..3066233 (-) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BA894_RS13895 (BA894_13895) - 3066303..3067796 (-) 1494 WP_065297446.1 SPOR domain-containing protein -
  BA894_RS13900 (BA894_13900) aroB 3067849..3068949 (-) 1101 WP_065297447.1 3-dehydroquinate synthase -
  BA894_RS13905 (BA894_13905) aroK 3068981..3069499 (-) 519 WP_014233147.1 shikimate kinase AroK -
  BA894_RS13910 (BA894_13910) pilQ 3069688..3071391 (-) 1704 WP_014233148.1 type IV pilus secretin PilQ Machinery gene
  BA894_RS13915 (BA894_13915) pilP 3071470..3071985 (-) 516 WP_014233149.1 pilus assembly protein PilP Machinery gene
  BA894_RS13920 (BA894_13920) pilO 3071975..3072568 (-) 594 WP_020334615.1 type 4a pilus biogenesis protein PilO Machinery gene
  BA894_RS13925 (BA894_13925) pilN 3072561..3073136 (-) 576 WP_065297448.1 PilN domain-containing protein Machinery gene
  BA894_RS13930 (BA894_13930) pilM 3073120..3074136 (-) 1017 WP_065297449.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 62086.65 Da        Isoelectric Point: 4.3016

>NTDB_id=187269 BA894_RS13910 WP_014233148.1 3069688..3071391(-) (pilQ) [Vibrio natriegens strain CCUG 16374]
MLTGLLSFWLVLLFTPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLLNTSVKDEQLYLL
DVKDFSTVVDSVEVFRDTSTTRLVTHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLISINFQDIPVRNV
LQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLEKQQLEEEMGE
LSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVKQVQIEARIVTVS
EGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSIAFQVAKLGSDTL
LDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITPDNRLVLDLSVTQ
DRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYEKVGKSELLIFV
TPKVVIQ

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=187269 BA894_RS13910 WP_014233148.1 3069688..3071391(-) (pilQ) [Vibrio natriegens strain CCUG 16374]
ATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTACCCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGC
GTTAAAGAGTATCGACTTTCGCACGAATAAGGACAAAGACGCGGTGATTGTGGTGGAACTGTCTTCACCAGCTGCGATTG
TCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTGAATACGTCAGTGAAAGATGAGCAGTTATATCTCCTC
GATGTAAAAGACTTTTCAACGGTAGTGGACAGCGTGGAAGTCTTTCGTGATACCTCGACGACTCGTTTGGTTACGCACAT
CAGTGATGATTACACCCACGATTACCGCTTGGCAGGGCGCTATTTGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAA
AAACACCAGATAAGAGCATCTTAGAGAAAGAAGGCAAACTGATATCGATTAACTTCCAGGATATCCCGGTACGTAACGTC
TTACAGCTCATTGCCGACTATAACCAGTTTAACCTGGTGGTATCAGACTCGGTCGAAGGCAACCTGACACTGCGACTTGA
TGGTGTGCCTTGGCAGCAGGTTTTAGACATTATTCTGCAAGTAAAAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTC
TTGTCGCGCCGACGGATGAACTTGACCTTCGAGAGAAGCAGCAACTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAA
CTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGATATTGCTGAGATGATTAATGGTGAAGGCAATATCAG
CATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTAACTCACTATTGGTCAGAGAATTGCCAGAGAATATCT
TGGTTATTCGTGACATTATCGAATCACTCGATATTCCGGTTAAGCAGGTCCAAATCGAAGCGAGAATTGTCACCGTCAGT
GAAGGGAATATGGATGAGCTTGGCATTCGATGGGGATTCTCTTCCATCAACGGCAATAACACCGTTGGTGGCTCGATTGA
GAATAACCTCGCAACCATTGGCCTTTATGAAGGTGATGGTGAAGAGGGGGAGGGCGGCAGTGTTGGAATTGATGATTTTC
TTAACGTCAATCTGGCCGCTACTAACCCGAGCGCAACCAGCATTGCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTG
CTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCTGAGATCATCTCAAGCCCTCGTTTAATCACGACTAATAA
AAAACCTGCCTATATAGAACAAGGTACAGAAATTCCGTATCTAGAATCATCATCGAGTGGTGCGACAACCATTACGTTCA
AAAAGGCGGTGTTAAGTTTAAAGGTAACGCCCCAAATTACACCGGATAACCGTCTGGTGCTGGATTTAAGTGTTACTCAG
GACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGTCACAATAGACACCCAGAGAATAGGTACTCAAGTCCT
AGTAAATAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAACACAGTATTACCAACTCTGTCGATAAGGTGCCATTAC
TCGGTGATCTGCCGTTATTAGGTGCACTTTTCCGCAGAAGTTATGAAAAAGTTGGTAAAAGTGAACTGCTGATTTTCGTT
ACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(407-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

89.594

100

0.896
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.929

99.647

0.757
  pilQ Vibrio cholerae strain A1552

75.929

99.647

0.757
  pilQ Legionella pneumophila strain ERS1305867

41.091

97.002

0.399
  pilQ Legionella pneumophila strain Lp02

41.091

97.002

0.399
  pilQ Pseudomonas aeruginosa PAK

40.647

98.06

0.399
  pilQ Acinetobacter baumannii D1279779

37.99

100

0.393
  pilQ Acinetobacter baumannii strain A118

37.99

100

0.393
  comQ Acinetobacter baylyi ADP1

37.651

100

0.384

Multiple sequence alignment