Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BA894_RS13920 | Genome accession | NZ_CP016351 |
| Coordinates | 3071975..3072568 (-) | Length | 197 a.a. |
| NCBI ID | WP_020334615.1 | Uniprot ID | A0AAN1CWF1 |
| Organism | Vibrio natriegens strain CCUG 16374 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3066975..3077568
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA894_RS13900 (BA894_13900) | aroB | 3067849..3068949 (-) | 1101 | WP_065297447.1 | 3-dehydroquinate synthase | - |
| BA894_RS13905 (BA894_13905) | aroK | 3068981..3069499 (-) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| BA894_RS13910 (BA894_13910) | pilQ | 3069688..3071391 (-) | 1704 | WP_014233148.1 | type IV pilus secretin PilQ | Machinery gene |
| BA894_RS13915 (BA894_13915) | pilP | 3071470..3071985 (-) | 516 | WP_014233149.1 | pilus assembly protein PilP | Machinery gene |
| BA894_RS13920 (BA894_13920) | pilO | 3071975..3072568 (-) | 594 | WP_020334615.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BA894_RS13925 (BA894_13925) | pilN | 3072561..3073136 (-) | 576 | WP_065297448.1 | PilN domain-containing protein | Machinery gene |
| BA894_RS13930 (BA894_13930) | pilM | 3073120..3074136 (-) | 1017 | WP_065297449.1 | type IV pilus assembly protein PilM | Machinery gene |
| BA894_RS13935 (BA894_13935) | - | 3074280..3076847 (+) | 2568 | WP_065297450.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23102.59 Da Isoelectric Point: 4.7130
>NTDB_id=187271 BA894_RS13920 WP_020334615.1 3071975..3072568(-) (pilO) [Vibrio natriegens strain CCUG 16374]
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGFGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=187271 BA894_RS13920 WP_020334615.1 3071975..3072568(-) (pilO) [Vibrio natriegens strain CCUG 16374]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAACTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTTACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTTTCGGCTATTGGCTGTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTCAAAGTTGCGTTACGAATTAAAGCCAACAAGGTTGCCGCATTACCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTTAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAACTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTTACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.947 |
96.447 |
0.858 |
| pilO | Vibrio cholerae strain A1552 |
70.558 |
100 |
0.706 |