Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   BA893_RS14345 Genome accession   NZ_CP016349
Coordinates   3144335..3146038 (-) Length   567 a.a.
NCBI ID   WP_014233148.1    Uniprot ID   -
Organism   Vibrio natriegens strain CCUG 16373     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3139335..3151038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA893_RS14325 (BA893_14325) - 3140041..3140880 (-) 840 WP_014233144.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  BA893_RS14330 (BA893_14330) - 3140950..3142443 (-) 1494 WP_065300284.1 SPOR domain-containing protein -
  BA893_RS14335 (BA893_14335) aroB 3142496..3143596 (-) 1101 WP_065300285.1 3-dehydroquinate synthase -
  BA893_RS14340 (BA893_14340) aroK 3143628..3144146 (-) 519 WP_014233147.1 shikimate kinase AroK -
  BA893_RS14345 (BA893_14345) pilQ 3144335..3146038 (-) 1704 WP_014233148.1 type IV pilus secretin PilQ Machinery gene
  BA893_RS14350 (BA893_14350) pilP 3146373..3146888 (-) 516 WP_065300286.1 pilus assembly protein PilP Machinery gene
  BA893_RS14355 (BA893_14355) pilO 3146878..3147471 (-) 594 WP_065300287.1 type 4a pilus biogenesis protein PilO Machinery gene
  BA893_RS14360 (BA893_14360) pilN 3147464..3148039 (-) 576 WP_065300288.1 PilN domain-containing protein Machinery gene
  BA893_RS14365 (BA893_14365) pilM 3148023..3149039 (-) 1017 WP_065300289.1 type IV pilus biogenesis protein PilM Machinery gene

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 62086.65 Da        Isoelectric Point: 4.3016

>NTDB_id=187224 BA893_RS14345 WP_014233148.1 3144335..3146038(-) (pilQ) [Vibrio natriegens strain CCUG 16373]
MLTGLLSFWLVLLFTPFALADGGMSNALKSIDFRTNKDKDAVIVVELSSPAAIVDIQRVQEGLSIDLLNTSVKDEQLYLL
DVKDFSTVVDSVEVFRDTSTTRLVTHISDDYTHDYRLAGRYLEITVSKLKSDEKTPDKSILEKEGKLISINFQDIPVRNV
LQLIADYNQFNLVVSDSVEGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPTDELDLREKQQLEKQQLEEEMGE
LSSEIIKVNFAKASDIAEMINGEGNISMLSERGSMTIDERTNSLLVRELPENILVIRDIIESLDIPVKQVQIEARIVTVS
EGNMDELGIRWGFSSINGNNTVGGSIENNLATIGLYEGDGEEGEGGSVGIDDFLNVNLAATNPSATSIAFQVAKLGSDTL
LDLELSALQQESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTITFKKAVLSLKVTPQITPDNRLVLDLSVTQ
DRPGQVVKTGTGEAVTIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYEKVGKSELLIFV
TPKVVIQ

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=187224 BA893_RS14345 WP_014233148.1 3144335..3146038(-) (pilQ) [Vibrio natriegens strain CCUG 16373]
ATGCTCACTGGGCTCTTATCCTTTTGGTTAGTTTTACTTTTTACCCCTTTTGCTTTGGCTGATGGCGGGATGTCTAATGC
GTTAAAGAGTATCGACTTTCGCACGAACAAGGACAAAGACGCGGTGATTGTGGTGGAACTGTCTTCACCAGCTGCGATTG
TCGATATTCAGCGGGTTCAGGAAGGACTGAGCATCGACTTGCTGAATACGTCAGTGAAAGATGAGCAGTTATATCTCCTT
GATGTAAAAGACTTTTCAACGGTAGTGGACAGCGTGGAAGTCTTTCGTGATACCTCGACGACTCGTTTGGTTACGCACAT
CAGTGATGATTACACCCACGATTACCGATTGGCAGGGCGCTATTTGGAAATCACGGTCAGTAAACTCAAGTCTGATGAAA
AAACACCAGATAAGAGCATCTTAGAGAAAGAAGGCAAACTGATATCGATTAACTTCCAGGATATCCCGGTACGTAACGTC
TTACAGCTCATTGCCGACTATAACCAGTTTAACCTGGTGGTATCAGACTCGGTCGAAGGCAACCTGACACTGCGACTTGA
TGGTGTGCCTTGGCAGCAGGTTTTAGACATTATTCTGCAAGTAAAAGGTTTGGATAAGCGAGTTGATGGTAATGTCATTC
TTGTCGCGCCGACGGATGAACTTGACCTTCGAGAGAAGCAGCAACTAGAGAAGCAGCAACTTGAAGAGGAAATGGGCGAA
CTGTCGTCTGAAATCATCAAAGTGAATTTTGCCAAAGCATCCGATATTGCTGAGATGATTAATGGTGAAGGCAATATCAG
CATGCTCTCTGAGCGAGGCAGCATGACGATTGATGAGCGCACTAACTCACTATTGGTCAGAGAATTGCCAGAGAATATCT
TGGTTATTCGTGACATTATCGAATCACTCGATATTCCGGTTAAGCAGGTCCAAATCGAAGCGAGAATTGTCACCGTCAGT
GAAGGGAATATGGATGAGCTTGGCATTCGATGGGGATTCTCTTCCATCAACGGCAATAACACCGTTGGTGGCTCGATTGA
GAATAACCTCGCAACCATTGGCCTTTATGAAGGTGATGGTGAAGAGGGGGAGGGCGGCAGTGTTGGAATTGATGATTTTC
TTAACGTCAATCTGGCCGCTACTAACCCGAGCGCAACCAGCATTGCGTTTCAGGTCGCCAAGTTGGGCTCTGACACTTTG
CTCGATCTGGAACTTTCTGCACTGCAGCAGGAGTCGAAAGCAGAGATCATCTCAAGTCCTCGTTTAATCACGACTAATAA
AAAACCTGCCTATATAGAACAAGGTACTGAAATTCCCTATCTAGAATCATCATCGAGTGGTGCGACAACCATTACGTTCA
AAAAAGCAGTATTAAGTCTGAAAGTCACGCCACAAATTACCCCGGACAACCGCCTGGTGCTGGATTTAAGTGTTACTCAG
GACAGACCGGGGCAAGTGGTAAAAACGGGAACTGGCGAAGCGGTCACAATAGACACCCAGAGAATAGGTACTCAAGTCTT
AGTAAACAACGGTGAGACGGTTGTTCTTGGCGGCATTTTCCAACACAGCATTACCAACTCTGTCGATAAAGTGCCATTAC
TCGGTGATCTGCCGTTATTAGGTGCACTTTTCCGCAGAAGTTATGAAAAAGTTGGTAAAAGTGAACTGCTGATTTTCGTT
ACACCAAAGGTTGTTATTCAATAG

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(244-309)

Bacterial type II and III secretion system protein (Secretin)

(407-565)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio campbellii strain DS40M4

89.594

100

0.896
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

75.929

99.647

0.757
  pilQ Vibrio cholerae strain A1552

75.929

99.647

0.757
  pilQ Legionella pneumophila strain ERS1305867

41.091

97.002

0.399
  pilQ Legionella pneumophila strain Lp02

41.091

97.002

0.399
  pilQ Pseudomonas aeruginosa PAK

40.647

98.06

0.399
  pilQ Acinetobacter baumannii D1279779

37.99

100

0.393
  pilQ Acinetobacter baumannii strain A118

37.99

100

0.393
  comQ Acinetobacter baylyi ADP1

37.651

100

0.384

Multiple sequence alignment